CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g01780

Gene name S-locus glycoprotein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g01780 814709 S-locus glycoprotein, putative F:sugar binding;P:recognition of pollen;C:cellular_component unknown;P S.X. H.G.
0.93 96.4 At3g46390 823789 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.92 96.0 At2g25990 817140 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.91 95.6 At2g05500 815099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At1g33000 840195 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.91 95.6 At1g59535 842244 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.90 95.1 At1g65170 842824 ubiquitin carboxyl-terminal hydrolase family protein F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PMO S.X. H.G.
0.88 94.0 At2g05870 815139 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.87 93.5 At1g67270 843047 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB S.X. H.G.
0.84 91.9 At2g05950 815148 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
319.8 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
301.3 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
248.9 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
241.5 100.0 E-MEXP-509-raw-cel-829148201
234.3 100.0 E-MEXP-509-raw-cel-829148561
223.0 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
210.9 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
197.0 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
164.3 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
160.4 99.9 E-MEXP-509-raw-cel-829148276
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 38 At4g03110 828090 RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA C.G. S.X.
0.02 1e-1 38 At3g22590 821831 RNA pol II accessory factor Cdc73 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP C.G. S.X.
0.02 4e-1 36 At5g44820 834512 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO C.G. S.X.
0.01 4e-1 36 At4g11490 826754 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 4e-1 36 At3g12000 820374 S-locus related protein SLR1, putative (S1) F:sugar binding;P:recognition of pollen;C:endomembrane system;PO C.G. S.X.
0.02 2e+0 34 At5g09900 830850 EMB2107 (EMBRYO DEFECTIVE 2107) Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max Gma.13528.1.A1_at CD399839 - - 3e+0 At1g66420 transcription regulator C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HV_CEb0012K09r2_at HV_CEb0012K09r2 - - 3e+0 At3g52470 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein C.G. S.X.
0.03 1e+1 32 Oryza sativa OsAffx.7280.1.S1_at - - - 0 C.G. S.X.
0.03 2e-3 44 Populus trichocarpa PtpAffx.220187.1.S1_at pmrna36543 hypothetical protein - 1e-3 At2g01780 S-locus glycoprotein, putative C.G. S.X.
0.04 1e-1 38 Triticum aestivum Ta.14011.2.A1_at BG906576 - - 5e-2 At2g01780 S-locus glycoprotein, putative C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1616012_at CF413967 hypothetical protein LOC100263474 - 8e-1 At5g03400 unknown protein C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.1104.1.A1_at AW191449 hypothetical protein LOC100280210 - 2e-1 At2g01960 TET14 (TETRASPANIN14) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0048544 The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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