Gene omics information

Query gene ID At2g01770
Gene name VIT1 (vacuolar iron transporter 1)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4659.8At2g01770814708VIT1 (vacuolar iron transporter 1)Encodes an iron transporter required for iron sequestration into vacuoles. Expressed in developing embryo and seed. Localized in the vacuolar membrane.S.X.H.G.
0.7083.5At5g49190834978SUS2 (SUCROSE SYNTHASE 2)Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency.S.X.H.G.
0.6882.2At3g12203820399scpl17 (serine carboxypeptidase-like 17)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBS.X.H.G.
0.6378.1At5g51210835196OLEO3 (OLEOSIN3)Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.S.X.H.G.
0.6378.1At1g65880842900BZO1 (BENZOYLOXYGLUCOSINOLATE 1)Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds.S.X.H.G.
0.6378.1At2g23190816851CYP81D7member of CYP81DS.X.H.G.
0.6176.7At2g34700818035pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.5974.7At3g44460823571DPBF2basic leucine zipper transcription factor (BZIP67), identical to basic leucine zipper transcription factor GI:18656053 from (Arabidopsis thaliana); identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052. Located in the nucleus and expressed during seed maturation in the cotyledons.S.X.H.G.
0.5773.8At1g18100838390E12A11E12A11 protein (E12A11)S.X.H.G.
0.5166.3At5g47670834818NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)F:transcription activator binding, transcription factor activity, transcription activator activity;P:positive regulation of gene-specific transcription, regulation of transcription;C:nucleus, intracellular;MPFOAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
696.7100.0GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
321.7100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
190.4100.0GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
181.9100.0GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
171.5100.0GSM131696ATGE_79_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
162.599.9GSM131694ATGE_79_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
161.999.9GSM133769Lindsey_1-21_torpedo-basal_Rep6_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
148.599.9GSM10453WT Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
131.899.9GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
130.199.9GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e+034At5g64170836538dentin sialophosphoprotein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMAC.G.S.X.
0.022e+034At5g56740835775HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2)Encodes an enzyme with histone acetyltransferase activity. Histone H4 is the primary substrate for the enzyme. Prior acetylation of lysine 12 of histone H4 reduces radioactive acetylation by HAG2. HAG2 acetylates histone H4 lysine 12.C.G.S.X.
0.032e+034At3g29034822546unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.032e+034At3g53850824552-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.022e+034At3g08600820007unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PBC.G.S.X.
0.022e+034At2g40200818611basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBC.G.S.X.
0.012e+034At1g64050842709unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPC.G.S.X.
0.022e+034At1g64150842719unknown proteinF:unknown;P:unknown;C:chloroplast, membrane;BOMFPAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.385e-29129Glycine maxGma.6465.1.S1_a_atBG839918--5e-29At2g01770VIT1 (vacuolar iron transporter 1)C.G.S.X.
0.045e-548Hordeum vulgareContig14768_atContig14768--8e-5At2g01770VIT1 (vacuolar iron transporter 1)C.G.S.X.
0.221e-1791Oryza sativaOs09g0396900AK071589.1-Protein of unknown function DUF125 family protein2e-3At2g01770VIT1 (vacuolar iron transporter 1)C.G.S.X.
0.203e-1893Populus trichocarpaPtpAffx.19606.1.A1_s_atCV235432hypothetical protein-2e-18At2g01770VIT1 (vacuolar iron transporter 1)C.G.S.X.
0.223e-859Triticum aestivumTa.22759.3.S1_x_atCA699496--2e-8At2g01770VIT1 (vacuolar iron transporter 1)C.G.S.X.
0.291e-29129Vitis vinifera1616730_atCD713671--4e-29At2g01770VIT1 (vacuolar iron transporter 1)C.G.S.X.
0.043e-342Zea maysZmAffx.794.1.S1_atAI770336--8e-1At3g21890zinc finger (B-box type) family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0055072Any process involved in the maintenance of an internal equilibrium of iron ions within an organism or cell.
XGO:0006880The process of binding or confining iron ions in an intracellular area such that they are separated from other components of a biological system.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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