CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g01620

Gene name MEE11 (maternal effect embryo arrest 11)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.86 93.1 At2g01620 814691 MEE11 (maternal effect embryo arrest 11) F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MPO S.X. H.G.
0.65 79.6 At4g37200 829874 HCF164 Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen. S.X. H.G.
0.61 76.7 At3g26085 822206 CAAX amino terminal protease family protein F:molecular_function unknown;P:proteolysis;C:membrane;BOPA S.X. H.G.
0.61 76.7 At1g54520 841894 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOM S.X. H.G.
0.61 76.7 At5g48590 834916 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO S.X. H.G.
0.61 76.7 At5g19540 832074 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POB S.X. H.G.
0.60 75.7 At1g69390 843271 ATMINE1 (Arabidopsis homologue of bacterial MinE 1) Encodes an Arabidopsis homologue of the bacterial MinE topological specificity factor ensuring correct division site placement. It is an essential integral component of the plastid division machinery. S.X. H.G.
0.60 75.7 At1g48450 841266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO S.X. H.G.
0.57 73.8 At1g67280 843048 lactoylglutathione lyase, putative / glyoxalase I, putative F:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPA S.X. H.G.
0.57 73.8 At1g49970 841420 CLPR1 Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.0 99.3 GSM133787 Brueggemann_A-5-Brueg-Mck_SLD GSE5731 UV-B Responses in Light Grown Plants: Similarities to Biotic Stress
10.7 99.2 GSM134391 St.Clair_1-52_279b_Est_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
8.6 99.0 GSM260957 A5-LLOYD-CON_REP2 GSE10326 Transcriptome analysis of pho3
7.9 98.9 GSM133786 Brueggemann_A-4-Brueg-PpH_SLD GSE5731 UV-B Responses in Light Grown Plants: Similarities to Biotic Stress
7.7 98.9 GSM134379 St.Clair_1-40_285_Est_0.02%-silwet_Rep1_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
7.4 98.8 E-ATMX-32-raw-cel-1562974621
6.8 98.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
6.5 98.6 GSM133746 Shirras_1-8_Non-Calcicole_Rep4_ATH1 GSE5728 Environmental Genomics of calcicole-calcifuge physiology
6.4 98.6 E-TABM-52-raw-cel-1583683342
6.3 98.6 GSM77188 20h pgm (Col-0) mutant replicate A GSE3424 Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-1 36 At5g38350 833817 disease resistance protein (NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFA C.G. S.X.
0.02 4e-1 36 At4g02990 828116 mitochondrial transcription termination factor family protein / mTERF family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB C.G. S.X.
0.02 4e-1 36 At4g22060 828295 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 4e-1 36 At3g44400 823565 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMBOFAV C.G. S.X.
0.01 4e-1 36 At3g07540 819943 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MOPFBV C.G. S.X.
0.01 2e+0 34 At5g55660 835660 - F:unknown;P:unknown;C:mitochondrion;MOFBPVA C.G. S.X.
0.02 2e+0 34 At5g19200 832040 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPA C.G. S.X.
0.01 2e+0 34 At5g66910 836825 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max Gma.8738.1.A1_at BU764151 - - 1e+0 At3g55672 - C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig23802_at Contig23802 - - 3e-20 At2g22310 ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) C.G. S.X.
0.03 3e+0 34 Oryza sativa Os01g0629000 CA763820 - Conserved hypothetical protein 8e-1 At5g04820 OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13) C.G. S.X.
0.02 2e+0 34 Populus trichocarpa PtpAffx.187.1.A1_at DN488801 - - 1e+0 At2g46910 plastid-lipid associated protein PAP / fibrillin family protein C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.58374.1.S1_at CA620125 - - 3e-1 At2g01620 MEE11 (maternal effect embryo arrest 11) C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1613700_at CD717961 hypothetical protein LOC100243012 - 3e-29 At5g23290 PDF5 (PREFOLDIN 5) C.G. S.X.
0.02 3e+0 32 Zea mays Zm.9404.1.A1_at BM348989 immature colon carcinoma transcript 1 protein - 2e-9 At1g62850 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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