Gene omics information

Query gene ID At2g01500
Gene name PFS2 (PRETTY FEW SEEDS 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g01500814678PFS2 (PRETTY FEW SEEDS 2)PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.S.X.H.G.
0.8894.0At2g33160817877glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity, nucleic acid binding;P:carbohydrate metabolic process;C:endomembrane system;PFBOMAS.X.H.G.
0.8693.1At2g40440818638BTB/POZ domain-containing proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.8592.4At3g28280822454-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8190.4At1g52430841674ubiquitin carboxyl-terminal hydrolase-relatedF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;POBMFS.X.H.G.
0.7989.1At1g29730839851ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
0.7989.1At4g25510828655unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7888.6At4g02970828121AT7SL-1 (Arabidopsis 7SL RNA 1)Signal recognition particle. Type 4 of RNA polymerase III dependent genes.S.X.H.G.
0.7788.0At5g44330834458male sterility MS5 family proteinF:binding;P:biological_process unknown;C:unknown;POBAS.X.H.G.
0.7586.9At1g33820840277unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
407.2100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
383.7100.0GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
378.3100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
308.2100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
301.3100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
291.8100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
291.4100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
290.7100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
282.5100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
265.2100.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.067e-1271At3g11260820297WOX5 (WUSCHEL RELATED HOMEOBOX 5)Arabidopsis thaliana WOX5 protein mRNAC.G.S.X.
0.077e-652At5g05770830462WOX7 (WUSCHEL-RELATED HOMEOBOX 7)Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.C.G.S.X.
0.071e-448At2g28610817410PRS (PRESSED FLOWER)Encodes a homeodomain containing protein that regulates lateral axis-dependent development of Arabidopsis flowers and is required for cell proliferation. It is expressed in a restricted number of L1 cells at the lateral regions of flower primordia, floral organ primordia, and young leaf primordia.C.G.S.X.
0.037e-342At2g47560819369zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
0.057e-342At1g46480841113WOX4 (WUSCHEL RELATED HOMEOBOX 4)Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. This protein also contains an acidic domain approximately 10 residues upstream of the WUS box.C.G.S.X.
0.023e-240At5g35940833584jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMC.G.S.X.
0.051e-138At5g59340836053WOX2 (WUSCHEL RELATED HOMEOBOX 2)Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. WOX2 has a putative Zinc finger domain downstream of the homeodomain. Transcripts are expressed in the egg cell, the zygote and the apical cell lineage and are reduced in met3-1 early embryos. This gene is necessary for cell divisions that form the apical embryo domain.C.G.S.X.
0.021e-138At5g40870834088AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1)Encodes a protein that appears to possess both uridine kinase and uracil phosphoribosyltransferase activities.C.G.S.X.
0.021e-138At4g09520826536catalytic/ metal ion binding / phosphoglycerate mutaseF:phosphoglycerate mutase activity, catalytic activity, metal ion binding;P:metabolic process;C:cellular_component unknown;BAOPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.072e-1067Glycine maxGmaAffx.24671.1.S1_atCA783362--7e-26At5g05770WOX7 (WUSCHEL-RELATED HOMEOBOX 7)C.G.S.X.
0.023e+032Hordeum vulgareHT09L21r_atHT09L21r--5e-3At3g42310unknown proteinC.G.S.X.
0.032e-138Oryza sativaOsAffx.26640.1.S1_at---0C.G.S.X.
0.076e-136Populus trichocarpaPtpAffx.208881.1.S1_atpmrna17616hypothetical protein-5e-1At2g01500PFS2 (PRETTY FEW SEEDS 2)C.G.S.X.
0.037e+032Triticum aestivumTaAffx.78828.1.S1_x_atCA726689--5e-3At1g55600WRKY10 (WRKY DNA-BINDING PROTEIN 10)C.G.S.X.
0.035e-134Vitis vinifera1606842_s_atCB914064--1e+0At4g21610LOL2 (LSD ONE LIKE 2)C.G.S.X.
0.033e+032Zea maysZmAffx.466.1.A1_atAI677405--8e-4At1g52870peroxisomal membrane protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0048366The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.
XGO:0048437The process whose specific outcome is the progression of the floral organ over time, from its formation to the mature structure.
XGO:0009965The process by which the anatomical structures of the leaf are generated and organized. Morphogenesis pertains to the creation of form.
XGO:0016049The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
XGO:0048314The process by which the anatomical structures of the embryo sac are generated and organized. Morphogenesis pertains to the creation of form. The embryo sac develops from the megaspore in heterosporous plants.
XGO:0048446The process by which the anatomical structures of the petal are generated and organized. Morphogenesis pertains to the creation of form.
XGO:0051301The process resulting in the physical partitioning and separation of a cell into daughter cells.
XGO:0048482The process by which the anatomical structures of the ovule are generated and organized. Morphogenesis pertains to the creation of form. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.
NGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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