CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g01450

Gene name ATMPK17

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g01450 814673 ATMPK17 member of MAP Kinase S.X. H.G.
0.84 91.9 At4g35790 829733 ATPLDDELTA Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death. S.X. H.G.
0.82 90.9 At5g06560 830544 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.73 85.5 At1g28960 839773 ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15) F:hydrolase activity, CoA pyrophosphatase activity (sent to SF);P:biological_process unknown;C:mitochondrion;BOMFPA S.X. H.G.
0.68 82.2 At1g19110 838494 inter-alpha-trypsin inhibitor heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;MBOPFA S.X. H.G.
0.67 81.6 At1g33250 840219 fringe-related protein F:transferase activity, transferring glycosyl groups;P:unknown;C:chloroplast, membrane;MPFO S.X. H.G.
0.66 80.1 At5g22000 832260 RHF2A (RING-H2 GROUP F2A) encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses. S.X. H.G.
0.65 79.6 At1g15880 838158 GOS11 (golgi snare 11) Golgi SNARE 11 protein (GOS11) S.X. H.G.
0.64 78.9 At1g58030 842170 CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Localized to the tonoplast. S.X. H.G.
0.62 77.3 At4g01960 828190 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.7 99.8 E-ATMX-33-raw-cel-1562596241
41.1 99.8 E-ATMX-33-raw-cel-1562596197
33.9 99.7 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
27.1 99.7 E-MEXP-285-raw-cel-440782725
24.1 99.6 E-MEXP-285-raw-cel-440782791
23.1 99.6 E-MEXP-1468-raw-cel-1591138787
21.9 99.6 E-MEXP-1468-raw-cel-1591138919
21.6 99.6 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
21.5 99.6 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
21.2 99.6 E-MEXP-1468-raw-cel-1591138952
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.35 8e-50 198 At3g18040 821329 MPK9 (MAP KINASE 9) MAP KINASE 9 C.G. S.X.
0.32 5e-48 192 At1g18150 838394 ATMPK8 ATMPK8, C.G. S.X.
0.25 2e-26 121 At1g73670 843702 ATMPK15 member of MAP Kinase C.G. S.X.
0.19 1e-14 81 At3g14720 820700 ATMPK19 member of MAP Kinase C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 5e-9 63 Glycine max GmaAffx.50094.1.S1_at BU091503 - - 7e-118 At5g19010 MPK16 C.G. S.X.
0.14 1e-13 77 Hordeum vulgare Contig6092_at Contig6092 - - 2e-54 At2g42880 ATMPK20 C.G. S.X.
0.19 3e-17 91 Oryza sativa Os01g0629900 AK065930.1 - Blast and wounding induced mitogen-activatedprotein kinase 5e-65 At3g14720 ATMPK19 C.G. S.X.
0.14 4e-6 54 Populus trichocarpa PtpAffx.92745.1.S1_at CK104111 hypothetical protein - 4e-22 At1g73670 ATMPK15 C.G. S.X.
0.17 2e-10 67 Triticum aestivum Ta.6053.1.S1_at CA687955 Mitogen-activated protein kinase MAPK1 - 2e-45 At3g18040 MPK9 (MAP KINASE 9) C.G. S.X.
0.04 2e-4 46 Vitis vinifera 1619722_at CF213692 hypothetical protein LOC100246022 - 7e-26 At5g19010 MPK16 C.G. S.X.
0.17 9e-8 57 Zea mays Zm.15487.1.S1_at CD219309 MPK17-1 - putative MAPK - 2e-51 At3g18040 MPK9 (MAP KINASE 9) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage