Gene omics information

Query gene ID At2g01290
Gene name ribose-5-phosphate isomerase
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g01290814657ribose-5-phosphate isomeraseF:ribose-5-phosphate isomerase activity;P:glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, reductive pentose-phosphate cycle, D-ribose catabolic process, pentose-phosphate shunt, non-oxidative branch;C:cytoplasm;BOAFMPS.X.H.G.
0.4457.2At5g42130834218mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, chloroplast;MFPOS.X.H.G.
0.3338.1At3g21760821730UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOFS.X.H.G.
0.2522.6At1g01970839299pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POMFS.X.H.G.
0.092.8At3g02450821139cell division protein ftsH, putativeF:in 6 functions;P:unknown;C:integral to membrane, chloroplast;BOMFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
17.699.5GSM297387At.StarchSD.WTSS3.SS3R2L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycle
17.499.5GSM297392At.StarchSD.WTSS3.WTR1L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycle
15.899.5GSM142804SS001_ATH1_A7-Smith-10GSE6174Gene expression and carbohydrate metabolism through the diurnal cycle
14.799.4GSM275638Ler_60minGSE10876Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids
13.899.4GSM142815SS002_ATH1_A7-smith-13hGSE6174Gene expression and carbohydrate metabolism through the diurnal cycle
13.499.4GSM297382At.StarchSD.WTSS3.SS3R1L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycle
12.699.3GSM142663NE001_ATH1_A1-Evans-w20GSE6154Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
11.299.2E-MEXP-1344-raw-cel-1559561683
10.199.2GSM142666NE001_ATH1_A4-Evans-m20GSE6154Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
9.399.1E-MEXP-285-raw-cel-440782938
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.242e-21103At1g71100843450RSW10 (RADIAL SWELLING 10)Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis.C.G.S.X.
0.073e-240At3g04790819639ribose 5-phosphate isomerase-relatedF:ribose-5-phosphate isomerase activity;P:defense response to bacterium, reductive pentose-phosphate cycle;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;BOAFMPC.G.S.X.
0.011e-138At2g15880816084leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVAC.G.S.X.
0.021e-138At2g40100818599LHCB4.3 (light harvesting complex PSII)Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem IIC.G.S.X.
0.012e+034At5g26600832730catalytic/ pyridoxal phosphate bindingF:pyridoxal phosphate binding, catalytic activity;P:metabolic process;C:chloroplast;BOFAPMVC.G.S.X.
0.012e+034At4g17210827432myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAVC.G.S.X.
0.022e+034At4g23660828466AtPPT1 (Arabidopsis thaliana polyprenyltransferase 1)Encodes para-hydroxy benzoate polyprenyl diphosphate transferase. The enzyme was shown to be able to use a wide range of prenyl substrates : from GPP (C10) to decaprenyl diphosphate (C50).C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.309e-40165Glycine maxGmaAffx.92891.1.S1_atCF806885--5e-40At2g01290ribose-5-phosphate isomeraseC.G.S.X.
0.084e-1271Hordeum vulgareContig6341_s_atContig6341--1e-11At2g01290ribose-5-phosphate isomeraseC.G.S.X.
0.085e-550Oryza sativaOs07g0176900AK060861.1-Ribose-5-phosphate isomerase precursor (EC5.3.1.6)4e-5At2g01290ribose-5-phosphate isomeraseC.G.S.X.
0.212e-1997Populus trichocarpaPtpAffx.850.1.S1_atCV280371hypothetical protein-1e-14At2g01290ribose-5-phosphate isomeraseC.G.S.X.
0.072e-963Triticum aestivumTaAffx.7419.2.A1_atCA659442--1e-9At2g01290ribose-5-phosphate isomeraseC.G.S.X.
0.035e-134Vitis vinifera1622182_atCF414549hypothetical protein LOC100247460-2e-5At1g71100RSW10 (RADIAL SWELLING 10)C.G.S.X.
0.092e-136Zea maysZm.3024.1.A1_atBM336593ribose-5-phosphate isomerase-6e-3At3g04790ribose 5-phosphate isomerase-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0008219The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
XGO:0010228The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00112Link to KaPPA-View 4Calvin cycle
00117Link to KaPPA-View 4Pentose phosphate cycle



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00030Link to KEGG PATHWAYPentose phosphate pathway
00710Link to KEGG PATHWAYCarbon fixation in photosynthetic organisms
01065Link to KEGG PATHWAYBiosynthesis of alkaloids derived from histidine and purine
01070Link to KEGG PATHWAYBiosynthesis of plant hormones
01100Link to KEGG PATHWAYMetabolic pathways
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