Gene omics information

Query gene ID At2g01250
Gene name 60S ribosomal protein L7 (RPL7B)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g0125081465260S ribosomal protein L7 (RPL7B)F:structural constituent of ribosome, transcription regulator activity;P:translation;C:in 8 components;MOFAPS.X.H.G.
0.9496.7At3g6287082546260S ribosomal protein L7A (RPL7aB)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane;MOFAPS.X.H.G.
0.8994.6At4g1739082745160S ribosomal protein L15 (RPL15B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, nucleolus, membrane;MAOPFS.X.H.G.
0.8894.0At1g69620843298RPL34 (RIBOSOMAL PROTEIN L34)putative 60S ribosomal protein L34S.X.H.G.
0.8793.5At5g1613083147040S ribosomal protein S7 (RPS7C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, plasma membrane, membrane;MPOFS.X.H.G.
0.8693.1At1g02780839407emb2386 (embryo defective 2386)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:in 6 components;MAOFPS.X.H.G.
0.8592.4At1g0836083735660S ribosomal protein L10A (RPL10aA)F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;BOMPAFS.X.H.G.
0.8592.4At2g4184081878440S ribosomal protein S2 (RPS2C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;BOMFPAVS.X.H.G.
0.8491.9At3g6077082524840S ribosomal protein S13 (RPS13A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, cell wall, chloroplast;MOAFPS.X.H.G.
0.8491.9At2g3448081801160S ribosomal protein L18A (RPL18aB)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MOFPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.499.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
6.398.6GSM252665Arabidopsis Root from tip to 130 mm proximal to tip (cut 4dpg) rep3GSE9996Organ regeneration in plants is independent of stem cell niche activity
6.198.5GSM133977Birnbaum_1-7_StageI-4_Rep4_ATH1GSE5749A gene expression map of the Arabidopsis root
5.898.4GSM133976Birnbaum_1-6_StageI-3_Rep3_ATH1GSE5749A gene expression map of the Arabidopsis root
5.798.4GSM252679Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep1GSE9996Organ regeneration in plants is independent of stem cell niche activity
5.798.4GSM252666Arabidopsis Root from tip to 130 mm proximal to tip (cut 4dpg) rep4GSE9996Organ regeneration in plants is independent of stem cell niche activity
5.298.2E-MEXP-849-raw-cel-1181981046
5.198.2GSM252670Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (4dpg) rep4GSE9996Organ regeneration in plants is independent of stem cell niche activity
4.998.1GSM252677Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 13 hrs Taking 70 mm of Stump (4dpg) rep3GSE9996Organ regeneration in plants is independent of stem cell niche activity
4.998.1GSM184531Protoplasted root cells 2hr KCl control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.782e-138492At2g4412081901860S ribosomal protein L7 (RPL7C)F:structural constituent of ribosome, transcription regulator activity;P:translation;C:in 7 components;MOAFPC.G.S.X.
0.623e-94345At3g1358082056060S ribosomal protein L7 (RPL7D)F:structural constituent of ribosome, transcription regulator activity;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, chloroplast, large ribosomal subunit, membrane;MOFAPC.G.S.X.
0.046e-342At2g33810817948SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.C.G.S.X.
0.032e-240At1g51080841530unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOPFC.G.S.X.
0.039e-238At5g22170832278unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.622e-59230Glycine maxGma.6569.1.S1_s_atBG653647--2e-59At2g0125060S ribosomal protein L7 (RPL7B)C.G.S.X.
0.427e-41167Hordeum vulgareContig1343_atContig1343--2e-40At2g0125060S ribosomal protein L7 (RPL7B)C.G.S.X.
0.322e-32141Oryza sativaOs08g0234000AK102873.1-60S ribosomal protein L7-12e-47At2g4412060S ribosomal protein L7 (RPL7C)C.G.S.X.
0.505e-38159Populus trichocarpaPtpAffx.18530.1.A1_atCV259920hypothetical protein-9e-49At3g1358060S ribosomal protein L7 (RPL7D)C.G.S.X.
0.326e-43174Triticum aestivumTa.28549.2.S1_a_atBJ299871ribosomal protein L7-9e-34At2g4412060S ribosomal protein L7 (RPL7C)C.G.S.X.
0.552e-61234Vitis vinifera1607259_s_atCF511061hypothetical protein LOC100242794-7e-65At2g4412060S ribosomal protein L7 (RPL7C)C.G.S.X.
0.321e-32139Zea maysZm.14471.1.A1_a_atCF01721060S ribosomal protein L7-1-8e-31At2g4412060S ribosomal protein L7 (RPL7C)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006412The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
03010Link to KEGG PATHWAYRibosome
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