Gene omics information

Query gene ID At1g80840
Gene name WRKY40
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At1g80840844423WRKY40Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.S.X.H.G.
0.8391.4At4g29780829100unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MPFS.X.H.G.
0.8089.8At2g30040817555MAPKKK14member of MEKK subfamilyS.X.H.G.
0.8089.8At4g34410829591RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.S.X.H.G.
0.7184.2At3g61190825291BAP1 (BON ASSOCIATION PROTEIN 1)Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis.S.X.H.G.
0.6176.7At4g17500827464ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
180.3100.0E-MEXP-807-raw-cel-1173273144
160.399.9E-MEXP-807-raw-cel-1173273252
145.899.9E-MEXP-807-raw-cel-1173273088
140.599.9E-MEXP-807-raw-cel-1173273223
133.399.9E-MEXP-807-raw-cel-1173273060
117.499.9E-MEXP-807-raw-cel-1173273196
101.299.9E-MEXP-807-raw-cel-1173273116
70.399.9GSM184519Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
65.899.8E-MEXP-807-raw-cel-1173273170
55.399.8GSM184914Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.235e-78291At3g32090822964transcription factor-relatedF:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription;C:nucleus;PC.G.S.X.
0.172e-1273At2g25000817039WRKY60Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.C.G.S.X.
0.092e-654At4g31800829308WRKY18Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.C.G.S.X.
0.045e-446At1g18860838467WRKY61member of WRKY Transcription Factor; Group II-bC.G.S.X.
0.043e-240At2g21900816726WRKY59member of WRKY Transcription Factor; Group II-cC.G.S.X.
0.011e-138At5g36690833634-AT5G36690 and AT5G36780 represent identical copies. The duplication within clone F27C7 is believed an artifact with only one true copy existing.C.G.S.X.
0.011e-138At5g36780833645-AT5G36780 and AT5G36690 represent identical copies. The duplication within clone F27C7 is believed an artifact with only one true copy existing.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.202e-22107Glycine maxGma.10818.2.S1_atAW568786WRKY78-8e-23At1g80840WRKY40C.G.S.X.
0.029e-134Hordeum vulgareContig10310_atContig10310--8e-3At1g75690chaperone protein dnaJ-relatedC.G.S.X.
0.106e-859Oryza sativaOs.12032.1.S1_at---0C.G.S.X.
0.151e-26121Populus trichocarpaPtpAffx.10586.1.S1_atBP930543hypothetical protein-1e-26At1g80840WRKY40C.G.S.X.
0.045e-136Triticum aestivumTa.29394.1.S1_atCK207466--4e-16At2g37260TTG2 (TRANSPARENT TESTA GLABRA 2)C.G.S.X.
0.139e-650Vitis vinifera1614806_s_atCB343751hypothetical protein LOC100264507-2e-4At2g25000WRKY60C.G.S.X.
0.021e+130Zea maysZmAffx.795.1.A1_atAI770340--3e-3At5g46350WRKY8C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009611A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
XGO:0050691Any host process that modulates the frequency, rate, or extent of the antiviral response of a host cell or organism.
XGO:0042742Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
XGO:0050832Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
XGO:0009751A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus.
XGO:0031347Any process that modulates the frequency, rate or extent of a defense response.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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