CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g80830

Gene name NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At1g80830 844422 NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1) Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants. S.X. H.G.
0.52 67.4 At5g20960 832221 AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1) Encodes aldehyde oxidase AA01. S.X. H.G.
0.48 62.5 At1g12160 837768 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA S.X. H.G.
0.47 61.2 At2g45430 819151 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;PMFBO S.X. H.G.
0.46 59.8 At1g18910 838472 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBV S.X. H.G.
0.46 59.8 At1g16300 838199 GAPCP-2 F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:glycolysis, glucose metabolic process, metabolic process;C:plastid;BOPFMA S.X. H.G.
0.44 57.2 At1g22440 838850 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV S.X. H.G.
0.42 53.9 At5g63930 836514 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.38 46.7 At4g23510 828451 disease resistance protein (TIR class), putative F:transmembrane receptor activity;P:defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBO S.X. H.G.
0.32 35.7 At2g36290 818200 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:endoplasmic reticulum;BPOFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.3 99.7 E-MEXP-828-raw-cel-1156922905
32.1 99.7 GSM157315 Hammond_3-5_Potassium-starved-root_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
31.4 99.7 E-MEXP-828-raw-cel-1156922829
29.9 99.7 GSM75516 slr-1 0h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
27.2 99.7 GSM291118 root - 21% oxygen - 48h - B GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
26.0 99.7 E-MEXP-828-raw-cel-1156922318
25.7 99.7 GSM291119 root - 21% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
25.0 99.6 GSM290827 root - 04% oxygen - 48h - B GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
24.5 99.6 GSM131461 AtGen_6-9421_Heatstress(3h)+3hrecovery-Roots-6.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
24.3 99.6 E-MEXP-828-raw-cel-1156922923
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 0 1082 At1g15960 838166 NRAMP6 member of Nramp2 family C.G. S.X.
0.01 2e-1 38 At4g18790 827613 NRAMP5 member of Nramp2 family C.G. S.X.
0.01 2e-1 38 At3g56040 824770 UGP3 (UDP-GLUCOSE PYROPHOSPHORYLASE 3) F:unknown;P:biological_process unknown;C:chloroplast;PFOMB C.G. S.X.
0.01 8e-1 36 At5g60210 836143 - F:unknown;P:unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.01 8e-1 36 At5g67170 836852 SEC-C motif-containing protein / OTU-like cysteine protease family protein F:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;BMOPFV C.G. S.X.
0.01 8e-1 36 At4g22750 828372 zinc finger (DHHC type) family protein F:zinc ion binding;P:unknown;C:endomembrane system;MOFP C.G. S.X.
0.01 3e+0 34 At5g48600 834917 ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) member of SMC subfamily C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 8e-8 59 Glycine max GmaAffx.65013.1.S1_at BQ611085 - - 7e-20 At1g15960 NRAMP6 C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig7210_at Contig7210 - - 1e+0 At5g19190 unknown protein C.G. S.X.
0.15 7e-12 73 Oryza sativa Os.25557.1.S1_at - - - 0 C.G. S.X.
0.38 6e-21 103 Populus trichocarpa PtpAffx.218616.1.S1_s_at pmrna34301 nramp transporter - 2e-57 At1g15960 NRAMP6 C.G. S.X.
0.07 9e-7 56 Triticum aestivum TaAffx.85731.1.S1_at CA620148 - - 3e-7 At1g80830 NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1) C.G. S.X.
0.08 7e-14 77 Vitis vinifera 1619841_at CD800826 hypothetical protein LOC100256746 - 3e-23 At1g15960 NRAMP6 C.G. S.X.
0.01 1e+0 34 Zea mays Zm.1994.1.S1_at CD442162 hypothetical protein LOC100193300 - 6e+0 At5g63070 40S ribosomal protein S15, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0034755 A process whereby an iron ion is transported from one side of a membrane to the other.
S GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
S GO:0006828 The directed movement of manganese (Mn) ions into, out of, within or between cells.
S GO:0015691 The directed movement of cadmium (Cd) ions into, out of, within or between cells.
S GO:0015692 The directed movement of lead (Pb) ions into, out of, within or between cells.
N GO:0006875 Any process involved in the maintenance of an internal equilibrium of metal ions at the level of a cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00064 The cinnamate-monolignol pathway/sinapoyl ester biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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