Gene omics information

Query gene ID At1g80830
Gene name NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4659.8At1g80830844422NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1)Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants.S.X.H.G.
0.5267.4At5g20960832221AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)Encodes aldehyde oxidase AA01.S.X.H.G.
0.4862.5At1g12160837768flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAS.X.H.G.
0.4761.2At2g45430819151DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;PMFBOS.X.H.G.
0.4659.8At1g18910838472protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBVS.X.H.G.
0.4659.8At1g16300838199GAPCP-2F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:glycolysis, glucose metabolic process, metabolic process;C:plastid;BOPFMAS.X.H.G.
0.4457.2At1g22440838850alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAVS.X.H.G.
0.4253.9At5g63930836514leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.3846.7At4g23510828451disease resistance protein (TIR class), putativeF:transmembrane receptor activity;P:defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBOS.X.H.G.
0.3235.7At2g36290818200hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:endoplasmic reticulum;BPOFAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
37.399.7E-MEXP-828-raw-cel-1156922905
32.199.7GSM157315Hammond_3-5_Potassium-starved-root_Rep1_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plants
31.499.7E-MEXP-828-raw-cel-1156922829
29.999.7GSM75516slr-1 0h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
27.299.7GSM291118root - 21% oxygen - 48h - BGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
26.099.7E-MEXP-828-raw-cel-1156922318
25.799.7GSM291119root - 21% oxygen - 48h - AGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
25.099.6GSM290827root - 04% oxygen - 48h - BGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
24.599.6GSM131461AtGen_6-9421_Heatstress(3h)+3hrecovery-Roots-6.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)
24.399.6E-MEXP-828-raw-cel-1156922923
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.7301082At1g15960838166NRAMP6member of Nramp2 familyC.G.S.X.
0.012e-138At4g18790827613NRAMP5member of Nramp2 familyC.G.S.X.
0.012e-138At3g56040824770UGP3 (UDP-GLUCOSE PYROPHOSPHORYLASE 3)F:unknown;P:biological_process unknown;C:chloroplast;PFOMBC.G.S.X.
0.018e-136At5g60210836143-F:unknown;P:unknown;C:plasma membrane;MOBFPAVC.G.S.X.
0.018e-136At5g67170836852SEC-C motif-containing protein / OTU-like cysteine protease family proteinF:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;BMOPFVC.G.S.X.
0.018e-136At4g22750828372zinc finger (DHHC type) family proteinF:zinc ion binding;P:unknown;C:endomembrane system;MOFPC.G.S.X.
0.013e+034At5g48600834917ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3)member of SMC subfamilyC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.118e-859Glycine maxGmaAffx.65013.1.S1_atBQ611085--7e-20At1g15960NRAMP6C.G.S.X.
0.022e+034Hordeum vulgareContig7210_atContig7210--1e+0At5g19190unknown proteinC.G.S.X.
0.157e-1273Oryza sativaOs.25557.1.S1_at---0C.G.S.X.
0.386e-21103Populus trichocarpaPtpAffx.218616.1.S1_s_atpmrna34301nramp transporter-2e-57At1g15960NRAMP6C.G.S.X.
0.079e-756Triticum aestivumTaAffx.85731.1.S1_atCA620148--3e-7At1g80830NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1)C.G.S.X.
0.087e-1477Vitis vinifera1619841_atCD800826hypothetical protein LOC100256746-3e-23At1g15960NRAMP6C.G.S.X.
0.011e+034Zea maysZm.1994.1.S1_atCD442162hypothetical protein LOC100193300-6e+0At5g6307040S ribosomal protein S15, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0034755A process whereby an iron ion is transported from one side of a membrane to the other.
SGO:0030001The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
SGO:0006828The directed movement of manganese (Mn) ions into, out of, within or between cells.
SGO:0015691The directed movement of cadmium (Cd) ions into, out of, within or between cells.
SGO:0015692The directed movement of lead (Pb) ions into, out of, within or between cells.
NGO:0006875Any process involved in the maintenance of an internal equilibrium of metal ions at the level of a cell.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00064Link to KaPPA-View 4The cinnamate-monolignol pathway/sinapoyl ester biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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