CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g80820

Gene name CCR2 (CINNAMOYL COA REDUCTASE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g80820 844421 CCR2 (CINNAMOYL COA REDUCTASE) Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis. S.X. H.G.
0.86 93.1 At4g21390 827891 B120 F:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVA S.X. H.G.
0.36 43.6 At1g76070 843939 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF S.X. H.G.
0.18 11.4 At3g25780 822169 AOC3 (ALLENE OXIDE CYCLASE 3) Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884. S.X. H.G.
0.06 1.4 At2g26530 817194 AR781 unknown function S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
321.1 100.0 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
193.1 100.0 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
166.4 100.0 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
142.2 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
121.0 99.9 GSM184916 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
119.3 99.9 E-MEXP-546-raw-cel-863289404
109.7 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
108.5 99.9 GSM142838 MG001_ATH1_A17-Torres-6N3 GSE6176 Impact of Type III effectors on plant defense responses
94.8 99.9 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
89.0 99.9 GSM131317 AtGen_6-3321_Saltstress-Roots-3.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 1e-94 347 At1g15950 838165 CCR1 (CINNAMOYL COA REDUCTASE 1) Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis. C.G. S.X.
0.04 8e-3 42 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase C.G. S.X.
0.03 3e-2 40 At5g19440 832064 cinnamyl-alcohol dehydrogenase, putative (CAD) similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase C.G. S.X.
0.05 3e-2 40 At1g51410 841566 cinnamyl-alcohol dehydrogenase, putative (CAD) similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase C.G. S.X.
0.02 1e-1 38 At4g32295 829364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e-1 38 At1g79160 844257 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At3g57880 824957 C2 domain-containing protein F:molecular_function unknown;P:tryptophan biosynthetic process;C:endoplasmic reticulum, cell wall;MPOF C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 1e-8 61 Glycine max Gma.1445.2.S1_at BQ610936 - - 1e-11 At1g15950 CCR1 (CINNAMOYL COA REDUCTASE 1) C.G. S.X.
0.10 6e-2 38 Hordeum vulgare Contig6799_at Contig6799 cinnamoyl CoA reductase - 8e-13 At1g15950 CCR1 (CINNAMOYL COA REDUCTASE 1) C.G. S.X.
0.08 4e-9 63 Oryza sativa Os01g0283700 AK107149.1 - Cinnamoyl-CoA reductase (EC 1.2.1.44) 3e-9 At1g80820 CCR2 (CINNAMOYL COA REDUCTASE) C.G. S.X.
0.21 5e-11 69 Populus trichocarpa Ptp.7013.1.S1_at DN488870 cinnamoyl CoA reductase /// cinnamoyl CoA reductase /// cinnamoyl CoA reductase /// cinnamoyl CoA reductase /// cinnamoyl CoA reductase - 5e-11 At1g80820 CCR2 (CINNAMOYL COA REDUCTASE) C.G. S.X.
0.13 3e-5 50 Triticum aestivum Ta.1183.1.S1_at CD878098 cinnamoyl-CoA reductase - 2e-10 At1g15950 CCR1 (CINNAMOYL COA REDUCTASE 1) C.G. S.X.
0.06 6e-4 44 Vitis vinifera 1614423_at CF517687 hypothetical protein LOC100251623 - 1e-3 At1g80820 CCR2 (CINNAMOYL COA REDUCTASE) C.G. S.X.
0.09 5e-2 38 Zea mays Zm.2550.1.S1_at CF632382 cinnamoyl CoA reductase1 - 2e-1 At1g80820 CCR2 (CINNAMOYL COA REDUCTASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
N GO:0009809 The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00064 The cinnamate-monolignol pathway/sinapoyl ester biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00940 Phenylpropanoid biosynthesis
01061 Biosynthesis of phenylpropanoids
01100 Metabolic pathways
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