CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g80270

Gene name DNA-binding protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.95 97.0 At1g80270 844367 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMF S.X. H.G.
0.53 68.6 At2g28600 817408 ATP binding / ATP-dependent helicase/ nucleic acid binding F:nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.38 46.7 At2g40360 818629 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVA S.X. H.G.
0.35 41.6 At1g03360 839521 ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) F:RNA binding, exonuclease activity;P:unknown;C:mitochondrion;OMAFP S.X. H.G.
0.32 35.7 At5g52380 835314 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFVOP S.X. H.G.
0.29 30.3 At4g25630 828668 FIB2 (FIBRILLARIN 2) encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated. S.X. H.G.
0.23 19.3 At3g12270 820407 PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3) F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPA S.X. H.G.
0.20 14.4 At5g57280 835833 methyltransferase F:methyltransferase activity;P:metabolic process;C:unknown;BOMFPA S.X. H.G.
0.18 11.4 At3g03920 821062 Gar1 RNA-binding region family protein F:RNA binding, rRNA binding;P:rRNA processing;C:chloroplast thylakoid membrane, nucleolus;MPBOFVA S.X. H.G.
0.16 8.8 At3g18600 821391 DEAD/DEAH box helicase, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus;BOMFPAV S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
202.7 100.0 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
41.6 99.8 E-MEXP-849-raw-cel-1181981046
40.8 99.8 GSM133974 Birnbaum_1-4_StageI-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
36.3 99.7 GSM184839 Arabidopsis, root, longitudinal zone 1, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
35.7 99.7 E-MEXP-849-raw-cel-1181980998
35.1 99.7 E-MEXP-849-raw-cel-1181981006
34.0 99.7 GSM184832 Arabidopsis, root, longitudinal zone 1, standard conditions, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
31.6 99.7 GSM133975 Birnbaum_1-5_StageI-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
29.5 99.7 GSM133777 Lindsey_1-4_globular-basal_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
29.0 99.7 GSM265418 Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.39 4e-49 196 At1g15480 838118 DNA binding F:DNA binding;P:biological_process unknown;C:unknown;PMOFAB C.G. S.X.
0.02 6e-5 50 At3g15590 820799 DNA-binding protein, putative F:DNA binding;P:unknown;C:mitochondrion;PMOFB C.G. S.X.
0.01 2e-1 38 At4g18750 827609 DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4) Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons. C.G. S.X.
0.01 2e-1 38 At1g23900 839001 GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1) Encodes large subunit of the heterotetrameric adaptor protein complex AP-1. AP-1 is required for clathrin coated vesicles budding from the trans-Golgi network or plasma membrane C.G. S.X.
0.01 9e-1 36 At5g24260 832493 prolyl oligopeptidase family protein F:serine-type peptidase activity;P:proteolysis;C:membrane;BOMFAP C.G. S.X.
0.01 9e-1 36 At5g57150 835821 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMVO C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max Gma.6108.1.S1_at BQ611542 - - 1e+0 At5g42765 - C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig11112_at Contig11112 - - 2e-3 At4g37010 caltractin, putative / centrin, putative C.G. S.X.
0.02 2e-3 46 Oryza sativa Os07g0222700 AK102206.1 - TPR-like domain containing protein 1e-3 At1g80270 DNA-binding protein, putative C.G. S.X.
0.06 1e-9 65 Populus trichocarpa PtpAffx.26402.1.S1_at CK099588 hypothetical protein - 2e+0 At1g15480 DNA binding C.G. S.X.
0.02 1e-2 42 Triticum aestivum TaAffx.31472.1.S1_at CA615400 - - 4e+0 At5g19315 - C.G. S.X.
0.04 3e-1 36 Vitis vinifera 1618330_at CF210811 hypothetical protein LOC100252030 - 5e-9 At1g15480 DNA binding C.G. S.X.
0.02 6e-3 42 Zea mays Zm.13057.1.A1_at CA403915 - - 5e-2 At1g80270 DNA-binding protein, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage