Gene omics information

Query gene ID At1g80130
Gene name binding
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At1g80130844353bindingF:binding;P:response to oxidative stress;C:membrane;BPOMFAVS.X.H.G.
0.135.8At1g11210837662unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;POS.X.H.G.
0.051.1At4g39210830076APL3Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots.S.X.H.G.
0.010.2At1g29395839815COR414-TM1encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.S.X.H.G.
0.010.2At1g69870843323proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:response to salt stress, oligopeptide transport;C:plasma membrane, membrane;PBMFOS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
116.799.9GSM128706Shirras_3-3_LabCalcicole-12.5mM-CaCl2_Rep1_ATH1GSE5523Environmental Genomics of Calcicole-calcifuge physiology
60.299.8GSM128704Shirras_3-1_LabCalcicole-1mM-CaCl2_Rep1_ATH1GSE5523Environmental Genomics of Calcicole-calcifuge physiology
55.799.8GSM133737Buchanan-Wollaston_A-9-bwoll-Co1_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
52.499.8GSM131279AtGen_6-1611_Cold(4°C)-Shoots-24.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.033e-550At2g45010819109unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMOC.G.S.X.
0.035e-446At2g21960816732unknown proteinF:unknown;P:unknown;C:chloroplast;PBOC.G.S.X.
0.027e-342At3g02340821090zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVABC.G.S.X.
0.027e-342At3g50140824176unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;MPOFVBAC.G.S.X.
0.021e-138At3g068686241205unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVC.G.S.X.
0.021e-138At3g06870819871proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVBC.G.S.X.
0.011e-138At2g32230817782pentatricopeptide (PPR) repeat-containing proteinF:antiporter activity, drug transporter activity;P:multidrug transport;C:membrane;PMOFC.G.S.X.
0.021e-138At1g03770839413RING1B (RING 1B)Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.034e-240Glycine maxGmaAffx.40798.1.S1_atBG405455--3e+1At5g55010unknown proteinC.G.S.X.
0.032e-136Hordeum vulgareContig4670_s_atContig4670--4e+0At4g32530vacuolar ATP synthase, putative / V-ATPase, putativeC.G.S.X.
0.039e-136Oryza sativaOsAffx.29709.1.S1_at---0C.G.S.X.
0.033e+034Populus trichocarpaPtpAffx.218883.1.S1_atpmrna34627hypothetical protein-4e+0At3g27920ATMYB0 (MYB DOMAIN PROTEIN 0)C.G.S.X.
0.043e-240Triticum aestivumTaAffx.107325.1.S1_s_atCA728665--2e-2At1g14687AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)C.G.S.X.
0.064e-548Vitis vinifera1618148_atCB002010hypothetical protein LOC100257716-9e-3At5g20190bindingC.G.S.X.
0.038e-134Zea maysZm.5074.1.A1_atAI600716--5e-14At3g62600ATERDJ3BC.G.S.X.
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Biological processes

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ECCGO IDProcess Name
XGO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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