CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g80130

Gene name binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g80130 844353 binding F:binding;P:response to oxidative stress;C:membrane;BPOMFAV S.X. H.G.
0.13 5.8 At1g11210 837662 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO S.X. H.G.
0.05 1.1 At4g39210 830076 APL3 Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots. S.X. H.G.
0.01 0.2 At1g29395 839815 COR414-TM1 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. S.X. H.G.
0.01 0.2 At1g69870 843323 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:response to salt stress, oligopeptide transport;C:plasma membrane, membrane;PBMFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
116.7 99.9 GSM128706 Shirras_3-3_LabCalcicole-12.5mM-CaCl2_Rep1_ATH1 GSE5523 Environmental Genomics of Calcicole-calcifuge physiology
68.2 99.9 E-TABM-52-raw-cel-1583683438
65.1 99.8 E-TABM-52-raw-cel-1583683598
64.5 99.8 E-TABM-209-raw-cel-1316546471
60.2 99.8 GSM128704 Shirras_3-1_LabCalcicole-1mM-CaCl2_Rep1_ATH1 GSE5523 Environmental Genomics of Calcicole-calcifuge physiology
55.7 99.8 GSM133737 Buchanan-Wollaston_A-9-bwoll-Co1_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
52.4 99.8 GSM131279 AtGen_6-1611_Cold(4°C)-Shoots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
52.0 99.8 E-ATMX-32-raw-cel-1562974621
51.1 99.8 E-ATMX-32-raw-cel-1562974409
49.4 99.8 E-ATMX-32-raw-cel-1562974595
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 3e-5 50 At2g45010 819109 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO C.G. S.X.
0.03 5e-4 46 At2g21960 816732 unknown protein F:unknown;P:unknown;C:chloroplast;PBO C.G. S.X.
0.02 7e-3 42 At3g02340 821090 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVAB C.G. S.X.
0.02 7e-3 42 At3g50140 824176 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;MPOFVBA C.G. S.X.
0.02 1e-1 38 At3g06868 6241205 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPV C.G. S.X.
0.02 1e-1 38 At3g06870 819871 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVB C.G. S.X.
0.01 1e-1 38 At2g32230 817782 pentatricopeptide (PPR) repeat-containing protein F:antiporter activity, drug transporter activity;P:multidrug transport;C:membrane;PMOF C.G. S.X.
0.02 1e-1 38 At1g03770 839413 RING1B (RING 1B) Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-2 40 Glycine max GmaAffx.40798.1.S1_at BG405455 - - 3e+1 At5g55010 unknown protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig4670_s_at Contig4670 - - 4e+0 At4g32530 vacuolar ATP synthase, putative / V-ATPase, putative C.G. S.X.
0.03 9e-1 36 Oryza sativa OsAffx.29709.1.S1_at - - - 0 C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.218883.1.S1_at pmrna34627 hypothetical protein - 4e+0 At3g27920 ATMYB0 (MYB DOMAIN PROTEIN 0) C.G. S.X.
0.04 3e-2 40 Triticum aestivum TaAffx.107325.1.S1_s_at CA728665 - - 2e-2 At1g14687 AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32) C.G. S.X.
0.06 4e-5 48 Vitis vinifera 1618148_at CB002010 hypothetical protein LOC100257716 - 9e-3 At5g20190 binding C.G. S.X.
0.03 8e-1 34 Zea mays Zm.5074.1.A1_at AI600716 - - 5e-14 At3g62600 ATERDJ3B C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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