CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g79900

Gene name BAC2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.19 12.7 At1g79900 844329 BAC2 encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol S.X. H.G.
0.55 70.6 At4g24000 828500 ATCSLG2 encodes a protein similar to cellulose synthase S.X. H.G.
0.40 50.8 At3g57680 824937 peptidase S41 family protein F:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPM S.X. H.G.
0.29 30.3 At2g25625 817103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.25 22.6 At1g54570 841899 esterase/lipase/thioesterase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:unknown;C:chloroplast, plastoglobule;BMPOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
135.4 99.9 GSM131303 AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
131.2 99.9 GSM133733 Buchanan-Wollaston_A-5-bwoll-NG1_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
117.9 99.9 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
79.7 99.9 GSM133731 Buchanan-Wollaston_A-3-bwoll-C0S_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
62.7 99.8 GSM269829 WT leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
62.0 99.8 GSM131299 AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
60.9 99.8 GSM133738 Buchanan-Wollaston_A-10-bwoll-Co2_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
59.7 99.8 GSM133732 Buchanan-Wollaston_A-4-bwoll-C5S_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
53.5 99.8 E-MEXP-475-raw-cel-680982521
53.3 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-2 40 At3g22142 5008021 structural constituent of cell wall Encodes a Protease inhibitor/seed storage/LTP family protein C.G. S.X.
0.02 3e-2 40 At3g13400 820540 sks13 (SKU5 Similar 13) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA C.G. S.X.
0.01 1e-1 38 At1g18190 838398 GC2 (golgin candidate 2) This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC2 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (508�668 aa) portion of the protein. C.G. S.X.
0.02 4e-1 36 At2g24540 816990 AFR (ATTENUATED FAR-RED RESPONSE) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA C.G. S.X.
0.02 4e-1 36 At2g40010 818589 60S acidic ribosomal protein P0 (RPP0A) F:structural constituent of ribosome;P:translational elongation, translation, ribosome biogenesis;C:cytosolic ribosome, ribosome;MOAFPB C.G. S.X.
0.01 2e+0 34 At5g54080 835494 HGO (HOMOGENTISATE 1,2-DIOXYGENASE) homogentisate 1,2-dioxygenase C.G. S.X.
0.02 2e+0 34 At5g60490 836170 FLA12 F:unknown;P:unknown;C:plasma membrane, anchored to membrane;PBOMAF C.G. S.X.
0.01 2e+0 34 At4g13820 827016 disease resistance family protein / LRR family protein F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 3e-6 54 Glycine max GmaAffx.72743.1.S1_at AI496298 - - 1e-6 At1g79900 BAC2 C.G. S.X.
0.03 8e-1 34 Hordeum vulgare Contig3426_at Contig3426 - - 9e-5 At4g14690 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) C.G. S.X.
0.04 4e-3 44 Oryza sativa Os01g0225000 9629.m01215 - Mitochondrial substrate carrier family protein 2e-3 At1g79900 BAC2 C.G. S.X.
0.17 1e-5 52 Populus trichocarpa PtpAffx.200612.1.S1_at pmrna1199 hypothetical protein - 9e-6 At1g79900 BAC2 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.4424.1.S1_at CA742364 - - 1e+0 At1g79900 BAC2 C.G. S.X.
0.06 1e-1 36 Vitis vinifera 1614704_at CF609069 hypothetical protein LOC100265259 - 2e-1 At1g79900 BAC2 C.G. S.X.
0.05 1e-2 40 Zea mays Zm.19039.1.S1_at BF728709 mitochondrial carnitine/acylcarnitine carrier-like protein - 2e-2 At1g79900 BAC2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
C GO:0006839 Transport of substances into, out of or within a mitochondrion.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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