Gene omics information

Query gene ID At1g79890
Gene name helicase-related
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g79890844328helicase-relatedF:in 6 functions;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;MOFPABVS.X.H.G.
0.3846.7At4g12620826875ORC1B (ORIGIN OF REPLICATION COMPLEX 1B)Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime.S.X.H.G.
0.3338.1At5g61460836267MIM (hypersensitive to MMS, irradiation and MMC)Encodes a protein closely related to the structural maintenance of chromosomes (SMC) family involved in structural changes in chromosomes.S.X.H.G.
0.1811.4At3g56870824854unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBS.X.H.G.
0.157.8At5g16690831530ORC3 (ORIGIN RECOGNITION COMPLEX SUBUNIT 3)Origin Recognition Complex subunit 3. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
322.2100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
233.1100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
230.8100.0GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
224.2100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
222.7100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
219.8100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
217.0100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
203.8100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
189.6100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
173.8100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.143e-66254At1g09995837534-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.012e-242At2g27470817292NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVAC.G.S.X.
0.012e-242At1g13770837937-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOC.G.S.X.
0.013e-138At1g47600841169BGLU34 (BETA GLUCOSIDASE 34)Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change.C.G.S.X.
0.011e+036At5g55600835654agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing proteinF:RNA binding, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFC.G.S.X.
0.011e+036At5g53880835469unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plasma membrane;MOFPBAVC.G.S.X.
0.011e+036At5g22400832301rac GTPase activating protein, putativeF:Rac GTPase activator activity;P:signal transduction;C:intracellular, chloroplast;MOFPC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.045e-757Glycine maxPsAffx.C113000009_atPsAffx.C113000009--4e-7At1g79890helicase-relatedC.G.S.X.
0.016e-136Hordeum vulgareHM06F24r_atHM06F24r--1e+0At4g33020ZIP9C.G.S.X.
0.072e-450Oryza sativaOs05g0219800AK102822.1-DEAH helicase isoform 61e-4At1g79890helicase-relatedC.G.S.X.
0.252e-55218Populus trichocarpaPtpAffx.200616.1.S1_atpmrna1205hypothetical protein-2e-55At1g79890helicase-relatedC.G.S.X.
0.019e-240Triticum aestivumTaAffx.118490.2.S1_atCA640495--4e+0At1g60730aldo/keto reductase family proteinC.G.S.X.
0.013e-240Vitis vinifera1614412_s_atCB971898hypothetical protein LOC100243985-5e-1At3g17160unknown proteinC.G.S.X.
0.012e+034Zea maysZm.3083.1.A1_atAW091304--3e-2At5g08150unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006139The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage