CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g79850

Gene name RPS17 (RIBOSOMAL PROTEIN S17)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g79850 844324 RPS17 (RIBOSOMAL PROTEIN S17) nuclear-encoded 30S chloroplast ribosomal protein S17 S.X. H.G.
0.95 97.0 At2g33450 817910 50S ribosomal protein L28, chloroplast (CL28) F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast, membrane;BOPF S.X. H.G.
0.93 96.4 At1g48350 841255 ribosomal protein L18 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast, chloroplast envelope;BOPM S.X. H.G.
0.93 96.4 At1g78630 844199 emb1473 (embryo defective 1473) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAP S.X. H.G.
0.92 96.0 At3g54210 824588 ribosomal protein L17 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOMFP S.X. H.G.
0.91 95.6 At1g35680 840472 50S ribosomal protein L21, chloroplast / CL21 (RPL21) F:structural constituent of ribosome, RNA binding;P:response to cold, translation;C:ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope;BOPMF S.X. H.G.
0.91 95.6 At1g64510 842759 ribosomal protein S6 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast;BOP S.X. H.G.
0.91 95.6 At5g47190 834765 ribosomal protein L19 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPMF S.X. H.G.
0.91 95.6 At2g24090 816943 ribosomal protein L35 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOPMF S.X. H.G.
0.89 94.6 At3g52150 824379 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;MPOFBA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.6 99.0 E-MEXP-791-raw-cel-1122937542
8.3 99.0 GSM305281 control, biological replicate 1 GSE12137 LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana
7.9 98.9 GSM305283 control, biological replicate 2 GSE12137 LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana
7.8 98.9 E-MEXP-791-raw-cel-1122937524
7.3 98.8 GSM10457 WT Seedling 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
7.1 98.8 GSM10458 WT Seedling 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
6.1 98.5 GSM245483 9 hr Non-Stress IP RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
5.5 98.3 E-MEXP-791-raw-cel-1122937416
5.3 98.3 GSM245471 2 hr Non-Stress IP RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
5.1 98.2 E-ATMX-25-raw-cel-1441077462
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 6e-2 38 At5g65170 836641 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB C.G. S.X.
0.02 6e-2 38 At1g02260 839344 transmembrane protein, putative F:citrate transmembrane transporter activity, transporter activity;P:citrate transport;C:endomembrane system, integral to membrane;BOMAPFV C.G. S.X.
0.05 2e-1 36 At4g09270 826510 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB C.G. S.X.
0.05 2e-1 36 At4g09220 826504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB C.G. S.X.
0.02 2e-1 36 At3g53810 824548 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.00 2e-1 36 At1g67120 843032 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding F:nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding;P:regulation of transcription, DNA-dependent, regulation of protein complex assembly;C:chloroplast envelope;OMBFPVA C.G. S.X.
0.02 9e-1 34 At5g63320 836452 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.03 9e-1 34 At5g54470 835535 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POFM C.G. S.X.
0.02 9e-1 34 At5g56340 835734 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 1e-37 157 Glycine max Gma.1508.1.S1_at CD407478 - - 1e-37 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) C.G. S.X.
0.17 1e-10 65 Hordeum vulgare Contig4490_s_at Contig4490 - - 4e-10 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) C.G. S.X.
0.15 1e-22 107 Oryza sativa Os04g0691600 AF095707.1 - 30S ribosomal protein S17, chloroplast precursor(CS17) 2e-22 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) C.G. S.X.
0.23 3e-23 109 Populus trichocarpa PtpAffx.200625.1.S1_at pmrna1218 hypothetical protein - 3e-23 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) C.G. S.X.
0.21 3e-10 65 Triticum aestivum Ta.13258.3.S1_at CA620648 - - 3e-10 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) C.G. S.X.
0.30 2e-26 117 Vitis vinifera 1613729_at CB918682 hypothetical protein LOC100251530 - 1e-25 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) C.G. S.X.
0.17 8e-21 99 Zea mays Zm.7146.1.A1_at CF003899 30S ribosomal protein S17 /// hypothetical protein LOC100276656 - 3e-20 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006412 The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
03010 Ribosome
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