CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g79440

Gene name ALDH5F1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At1g79440 844282 ALDH5F1 Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004). S.X. H.G.
0.46 59.8 At2g21660 816705 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). S.X. H.G.
0.33 38.1 At2g22450 816777 riboflavin biosynthesis protein, putative F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAP S.X. H.G.
0.33 38.1 At5g11150 830984 ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713) Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family. S.X. H.G.
0.19 12.7 At5g39410 833937 binding / catalytic F:binding, catalytic activity;P:metabolic process;C:mitochondrion, plasma membrane, vacuole, membrane, chloroplast envelope;OBMFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.0 99.6 GSM269823 T6 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
18.8 99.5 GSM184504 Pericycle root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
17.8 99.5 GSM184507 Pericycle root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
17.7 99.5 GSM269831 T6 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
16.3 99.5 GSM158703 WT-ESTRADIOL-REP1 GSE6954 Identification of AGL24 downstream genes by using XVE inducible system
16.1 99.5 GSM269825 T8 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
13.2 99.4 E-ATMX-6-raw-cel-1308219081
13.1 99.4 GSM158702 HY213-ESTRADIOL-REP1 GSE6954 Identification of AGL24 downstream genes by using XVE inducible system
13.1 99.4 GSM184487 Epidermis&Cortex root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.1 99.4 GSM269815 T6 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-2 40 At2g41720 818771 EMB2654 (EMBRYO DEFECTIVE 2654) F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POMFBA C.G. S.X.
0.01 8e-1 36 At2g21480 816687 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 3e+0 34 At5g56090 835708 COX15 (cytochrome c oxidase 15) Encodes a homolog of COX15. Microarray analysis show a 3.2 fold increase in transcription after treatment with rotenone, an electron transport chain inhibitor. C.G. S.X.
0.01 3e+0 34 At4g33460 829483 ATNAP13 member of NAP subfamily C.G. S.X.
0.01 3e+0 34 At4g11270 826729 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cytosol;MFBOP C.G. S.X.
0.01 3e+0 34 At4g06526 825997 nucleic acid binding / zinc ion binding F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PFOM C.G. S.X.
0.01 3e+0 34 At4g00050 828175 UNE10 (unfertilized embryo sac 10) F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFO C.G. S.X.
0.01 3e+0 34 At3g59040 825073 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBA C.G. S.X.
0.01 3e+0 34 At3g61340 825306 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 1e-12 75 Glycine max GmaAffx.8320.1.S1_at BG157576 - - 4e-13 At1g79440 ALDH5F1 C.G. S.X.
0.33 2e-9 63 Hordeum vulgare Contig4992_at Contig4992 - - 5e-9 At1g79440 ALDH5F1 C.G. S.X.
0.26 7e-12 73 Oryza sativa Os02g0173900 AK060831.1 - Succinate semialdehyde dehydrogenase,mitochondrial precursor (EC 1.2.1.24) (NAD(+)-dependentsuccinic semialdehyde dehydrogenase) 5e-12 At1g79440 ALDH5F1 C.G. S.X.
0.20 2e-14 81 Populus trichocarpa Ptp.3030.1.S1_at DN484799 hypothetical protein - 6e-15 At1g79440 ALDH5F1 C.G. S.X.
0.25 6e-14 79 Triticum aestivum Ta.5774.1.S1_at AJ610592 - - 8e-14 At1g79440 ALDH5F1 C.G. S.X.
0.25 2e-51 202 Vitis vinifera 1606935_at CB969531 hypothetical protein LOC100262240 - 6e-51 At1g79440 ALDH5F1 C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.964.1.S1_at AI833796 - - 2e+0 At4g12760 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006540 The chemical reactions and pathways resulting in the formation of succinate from glutamate. Also known as GABA (gamma-aminobutyrate) shunt since it channels glutamate into the TCA cycle bypassing two steps of that cycle. There are three enzymes involved in the GABA shunt: glutamate decarboxylase (GAD), GABA aminotransferase (GABA-TA), and succinate semialdehyde dehydrogenase (SSADH). These three enzymes acting in concert to convert glutamate into succinate. The GABA shunt is predominantly associated with neurotransmission in the mammalian brain. It is also present in nonneuronal cells, in plants, in unicellular eukaryotes, and in prokaryotes.
X GO:0006950 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
X GO:0009408 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
X GO:0009416 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
X GO:0006800 The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH).
X GO:0009450 The chemical reactions and pathways resulting in the breakdown of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00250 Alanine, aspartate and glutamate metabolism
00350 Tyrosine metabolism
00650 Butanoate metabolism
01100 Metabolic pathways
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