CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g79410

Gene name AtOCT5 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER5)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g79410 844279 AtOCT5 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER5) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport;C:integral to membrane, membrane;MBFPOA S.X. H.G.
0.67 81.6 At5g49480 835008 ATCP1 (Ca2+-binding protein 1) AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl. S.X. H.G.
0.40 50.8 At1g55920 842043 ATSERAT2 Encodes a chloroplast/cytosol localized serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. S.X. H.G.
0.35 41.6 At1g76680 844001 OPR1 Encodes a a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases. One of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. S.X. H.G.
0.33 38.1 At4g34131 829559 UGT73B3 (UDP-glucosyl transferase 73B3) F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
89.5 99.9 E-MEXP-1443-raw-cel-1581869921
77.2 99.9 GSM205160 protoplast_controlDNA_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
76.0 99.9 GSM205156 protoplast_controlDNA_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
60.3 99.8 E-MEXP-1443-raw-cel-1581869863
37.6 99.7 GSM204026 protoplast_control_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
35.9 99.7 E-MEXP-1443-raw-cel-1581869745
31.6 99.7 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
30.1 99.7 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
29.7 99.7 GSM25869 A Treated - 4 GSE1491 Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
27.6 99.7 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.50 8e-41 169 At1g16370 838207 OCT6 (ORGANIC CATION/CARNITINE TRANSPORTER 6) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOA C.G. S.X.
0.02 5e-2 40 At1g26140 839155 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 2e-1 38 At1g16390 838209 ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOA C.G. S.X.
0.01 8e-1 36 At3g49990 824161 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA C.G. S.X.
0.02 8e-1 36 At3g16280 820874 DNA binding / transcription factor encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.01 8e-1 36 At2g19950 816514 GC1 (Golgin Candidate 1) This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC1 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (558-715 aa) portion of the protein. C.G. S.X.
0.01 8e-1 36 At1g05180 839286 AXR1 (AUXIN RESISTANT 1) Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves. C.G. S.X.
0.02 8e-1 36 At1g72230 843555 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Glycine max HgAffx.14014.1.S1_at CB825991 - - 1e+1 Atmg00990 - C.G. S.X.
0.02 6e+0 32 Hordeum vulgare HVSMEk0004C11r2_s_at HVSMEk0004C11r2 - - 2e+0 At1g35365 unknown protein C.G. S.X.
0.02 2e+0 36 Oryza sativa Os01g0273000 NM_188074.1 - DSS1/SEM1 family protein 3e-12 At1g64750 ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.249.520.S1_at BU823894 hypothetical protein - 1e-2 At2g32050 cell cycle control protein-related C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.25471.1.S1_at CA699473 - - 4e+0 At5g04470 SIM (SIAMESE) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1619830_at CB969902 hypothetical protein LOC100249008 /// hypothetical protein LOC100257602 - 2e-1 At1g02065 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8) C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.823.1.S1_at AI770503 - - 1e-5 At3g07080 membrane protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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