CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g79370

Gene name CYP79C1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.89 94.6 At1g79370 844275 CYP79C1 member of CYP79C S.X. H.G.
0.86 93.1 At3g62350 825408 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.75 86.9 At3g25990 822196 DNA-binding protein GT-1-related F:transcription factor activity;P:regulation of transcription;C:unknown;PM S.X. H.G.
0.75 86.9 At5g55080 835599 AtRAN4 (Ras-related nuclear protein 4) A member of RAN GTPase gene family. S.X. H.G.
0.67 81.6 At2g34555 818019 ATGA2OX3 (gibberellin 2-oxidase 3) F:gibberellin 2-beta-dioxygenase activity;P:gibberellin catabolic process;C:unknown;POBFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
576.3 100.0 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
259.0 100.0 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
188.8 100.0 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
182.6 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
175.7 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
168.5 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
168.3 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
166.9 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
164.0 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
159.4 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 6e-14 79 At4g39950 830154 CYP79B2 Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. C.G. S.X.
0.08 2e-11 71 At1g16400 838210 CYP79F2 Encodes cytochrome P450 CYP79F2. C.G. S.X.
0.04 4e-9 63 At2g22330 816765 CYP79B3 Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. C.G. S.X.
0.04 4e-9 63 At1g16410 838211 CYP79F1 (CYTOCHROME P450 79F1) member of CYP79F C.G. S.X.
0.08 3e-3 44 At1g58260 842194 CYP79C2 (CYTOCHROME P450 79C2) member of CYP79C subfamily of cytochrome p450s. Encodes a putative xylan endohydrolase. similar to some closely linked pseudogenes. C.G. S.X.
0.02 3e-3 44 At1g58265 842195 cytochrome P450-related F:electron carrier activity, monooxygenase activity, iron ion binding, heme binding;P:biological_process unknown;C:cellular_component unknown;PMFBO C.G. S.X.
0.02 5e-2 40 At5g05260 830408 CYP79A2 (CYTOCHROME P450 79A2) Encodes cytochrome P450 CYP79A2. C.G. S.X.
0.01 5e-2 40 At5g45570 834593 Ulp1 protease family protein F:peptidase activity, cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;POMBFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.5401.1.S1_s_at BM732974 - - 2e-1 At4g30930 NFD1 (NUCLEAR FUSION DEFECTIVE 1) C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig23763_at Contig23763 - - 1e+0 At2g38130 ATMAK3 C.G. S.X.
0.02 4e-4 48 Oryza sativa Os04g0171600 AK100766.1 - Cytochrome P450 79A1 (EC 1.14.13.41) (TyrosineN-monooxygenase) (Cytochrome P450Tyr) 2e-4 At1g79370 CYP79C1 C.G. S.X.
0.02 1e+0 36 Populus trichocarpa Ptp.3251.1.S1_at BU815406 - - 5e+0 At5g06690 WCRKC1 (WCRKC THIOREDOXIN 1) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.90900.1.S1_at CA659337 - - 2e-3 At2g20495 - C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1620478_at CF372295 hypothetical protein LOC100243951 - 3e-7 At2g19540 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.15913.1.S1_at CF009980 hypothetical protein LOC100276692 - 2e+0 At1g33270 patatin-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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