CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g79360

Gene name ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.20 14.4 At1g79360 844274 ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:ion transport;C:integral to membrane, membrane;BMFPOA S.X. H.G.
0.44 57.2 At5g02720 831821 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.25 22.6 At1g08730 837394 XIC Class XI myosin gene S.X. H.G.
0.12 4.9 At4g26830 828790 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO S.X. H.G.
0.09 2.8 At1g26320 839174 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOMFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
421.6 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
343.4 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
308.0 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
173.4 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
92.1 99.9 GSM133400 Knight_2-3_sfr6-lt_Rep1_ATH1 GSE5710 Dark-induced gene expression in sfr6
73.9 99.9 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
65.3 99.8 Capper_1-4_B8_water
60.5 99.8 E-MEXP-1299-raw-cel-1519902871
55.0 99.8 Capper_1-10_E6_water
50.6 99.8 GSM184909 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.27 1e-11 71 At1g16390 838209 ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOA C.G. S.X.
0.02 1e-2 42 At1g13400 837900 NUB (NUBBIN) Along with JAG, it is involved in stamen and carpel development. Expression is limited to the adaxial side of lateral organs. Activated by AGAMOUS in a cal-1, ap1-1 background. C.G. S.X.
0.02 2e-1 38 At3g58550 825024 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P C.G. S.X.
0.01 2e-1 38 At3g17650 821032 YSL5 (YELLOW STRIPE LIKE 5) Arabidopsis thaliana metal-nicotianamine transporter YSL5 C.G. S.X.
0.02 2e-1 38 At1g02965 839537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 38 At1g02960 839363 unknown protein F:unknown;P:unknown;C:cellular_component unknown;OMPFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.25697.1.S1_at AW397661 - - 7e-1 At2g02230 AtPP2-B1 (Phloem protein 2-B1) C.G. S.X.
0.02 2e+0 34 Hordeum vulgare HVSMEa0008L11r2_at HVSMEa0008L11r2 - - 2e-1 At3g50960 PLP3a (Phosducin-like protein 3 homolog) C.G. S.X.
0.02 2e+0 36 Oryza sativa OsAffx.14134.1.S1_at - - - 0 C.G. S.X.
0.03 1e+0 36 Populus trichocarpa PtpAffx.161948.1.A1_at CK092884 hypothetical protein - 1e+0 At1g27695 glycine-rich protein C.G. S.X.
0.02 8e-1 36 Triticum aestivum TaAffx.85969.1.S1_at CA618026 - - 7e-2 At3g26780 catalytic C.G. S.X.
0.04 1e-2 40 Vitis vinifera 1617169_at CF413676 hypothetical protein LOC100263786 - 2e-8 At1g16390 ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3) C.G. S.X.
0.01 5e+0 32 Zea mays Zm.17538.1.S1_at CK370571 hypothetical protein LOC100273692 - 1e+0 At5g50710 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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