Gene omics information

Query gene ID At1g79320
Gene name AtMC6 (metacaspase 6)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5873.8At1g79320844270AtMC6 (metacaspase 6)F:cysteine-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;BOFPAS.X.H.G.
0.8089.8At2g28990817448leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
0.7284.8At2g28960817445leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.7284.8At1g07560837270leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
0.7184.2At1g68940843228armadillo/beta-catenin repeat protein-related / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBFVS.X.H.G.
0.6579.6At3g51350824298aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBAVS.X.H.G.
0.6478.9At5g07390830630ATRBOHA (respiratory burst oxidase homolog A)F:calcium ion binding;P:defense response;C:intrinsic to plasma membrane;MFPOBAS.X.H.G.
0.6378.1At1g73270843661scpl6 (serine carboxypeptidase-like 6)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOS.X.H.G.
0.6378.1At2g28970817446leucine-rich repeat protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
0.6277.3At4g15740827252C2 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;PMFOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
259.1100.0GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
161.199.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
133.199.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
128.799.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
120.399.9E-MEXP-828-raw-cel-1156922905
116.199.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
107.099.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
106.499.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
100.899.9GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
93.299.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.568e-71268At1g79330844271ATMC5 (ARABIDOPSIS THALIANA METACASPASE 5)Metacaspase AtMCPb2/AMC6. Caspase family protein. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam domain, PF00656: ICE-like protease (caspase) p20 domain.C.G.S.X.
0.357e-22105At1g79340844272AtMC4 (metacaspase 4)F:cysteine-type peptidase activity;P:proteolysis;C:plasma membrane;BOFPAMC.G.S.X.
0.201e-1791At1g79310844269AtMC7 (metacaspase 7)F:cysteine-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;BFOPAC.G.S.X.
0.011e-138At5g43130834330TAF4 (TBP-ASSOCIATED FACTOR 4)F:transcription initiation factor activity;P:transcription initiation;C:transcription factor TFIID complex;OMFBPVAC.G.S.X.
0.041e-138At5g04200830299AtMC9 (metacaspase 9)F:cysteine-type peptidase activity;P:proteolysis;C:apoplast;FPBOAC.G.S.X.
0.031e-138At1g62045842500-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.015e-136At5g37000833670exostosin family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBFC.G.S.X.
0.025e-136At5g39310833927ATEXPA24 (ARABIDOPSIS THALIANA EXPANSIN A24)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)C.G.S.X.
0.015e-136At4g32790829415exostosin family proteinF:catalytic activity;P:biological_process unknown;C:mitochondrion, membrane;PMOBVFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e+034Glycine maxGmaAffx.80157.1.S1_atAW317489--2e-1At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)C.G.S.X.
0.024e+032Hordeum vulgareContig24735_atContig24735--4e-3At1g56670GDSL-motif lipase/hydrolase family proteinC.G.S.X.
0.044e+034Oryza sativaOs01g0799900AK072822.1-Latex-abundant protein9e-4At5g04200AtMC9 (metacaspase 9)C.G.S.X.
0.192e-32141Populus trichocarpaPtpAffx.207822.1.S1_atpmrna15542hypothetical protein-2e-32At1g79320AtMC6 (metacaspase 6)C.G.S.X.
0.032e+034Triticum aestivumTaAffx.8419.1.S1_atCA625766--2e-2At1g08180unknown proteinC.G.S.X.
0.036e-134Vitis vinifera1608947_atCF609927hypothetical protein LOC100244812-7e-8At5g04200AtMC9 (metacaspase 9)C.G.S.X.
0.029e-134Zea maysZm.5662.1.A1_atAY109367.1--2e+0At1g67148unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006508The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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