Gene omics information

Query gene ID At1g79090
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7687.4At1g79090844250unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBS.X.H.G.
0.7586.9At3g07100819896protein transport protein Sec24, putativeF:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFBOPVAS.X.H.G.
0.6478.9At3g10380820201SEC8 (SUBUNIT OF EXOCYST COMPLEX 8)Subunit of the Putative Arabidopsis Exocyst ComplexS.X.H.G.
0.6378.1At5g14950831347GMII (GOLGI ALPHA-MANNOSIDASE II)Encodes a golgi alpha-mannosidase, an enzyme responsible for the formation of major complex-type N-glycans.S.X.H.G.
0.6075.7At3g13670820572protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVAS.X.H.G.
0.5873.8At2g38020818380VCL1 (VACUOLELESS 1)necessary for proper vacuole formation and morphogenesis in ArabidopsisS.X.H.G.
0.5673.0At3g50590824223nucleotide bindingF:nucleotide binding;P:biological_process unknown;C:plasma membrane;MBFOPVS.X.H.G.
0.5570.6At2g20190816539CLASP (CLIP-ASSOCIATED PROTEIN)Encodes a microtubule-associated protein that is involved in both cell division and cell expansion. It likely promotes microtubule stability.S.X.H.G.
0.5469.5At5g06600830548UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)Encodes a ubiquitin-specific protease.S.X.H.G.
0.5267.4At1g21630838765calcium-binding EF hand family proteinF:calcium ion binding;P:unknown;C:cytosol, plasma membrane;BMOFPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
14.899.4GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.999.4GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.099.3GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.899.3GSM133965Fukuda_1-10_8B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
10.799.2GSM133959Fukuda_1-4_2B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
10.299.2GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.499.1GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.299.1GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
8.999.0GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.799.0GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.031e-346At3g22270821797unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFC.G.S.X.
0.013e-138At5g37200833694zinc finger (C3HC4-type RING finger) family proteinF:protein binding, transferase activity, transferring glycosyl groups, transcription factor activity, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
0.013e-138At3g10380820201SEC8 (SUBUNIT OF EXOCYST COMPLEX 8)Subunit of the Putative Arabidopsis Exocyst ComplexC.G.S.X.
0.013e-138At2g32765817837SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.C.G.S.X.
0.013e-138At2g04038814936AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFC.G.S.X.
0.011e+036At5g49950835059embryogenesis-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPC.G.S.X.
0.011e+036At5g54095835496unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OBMFPVAC.G.S.X.
0.011e+036At4g30690829192translation initiation factor 3 (IF-3) family proteinF:translation initiation factor activity;P:translational initiation;C:cell wall, chloroplast;BOMPFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.131e-1379Glycine maxGmaAffx.51177.2.S1_atBM886418--1e-14At1g79090unknown proteinC.G.S.X.
0.016e-136Hordeum vulgareContig23477_atContig23477--1e+0At4g30900-C.G.S.X.
0.052e-759Oryza sativaOs01g0769000AK100439.1--1e-10At3g22270unknown proteinC.G.S.X.
0.151e-22109Populus trichocarpaPtpAffx.201441.1.S1_s_atpmrna2844hypothetical protein-1e-22At1g79090unknown proteinC.G.S.X.
0.116e-963Triticum aestivumTaAffx.121937.1.S1_atBG263835--5e-9At1g79090unknown proteinC.G.S.X.
0.016e+032Vitis vinifera1621638_atCD719517hypothetical protein LOC100244583-3e-11At3g55850LAF3 (LONG AFTER FAR-RED 3)C.G.S.X.
0.048e-342Zea maysZm.4515.1.S1_atCO528625hypothetical protein LOC100272651-2e-2At1g79090unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
03018Link to KEGG PATHWAYRNA degradation
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