CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g78990

Gene name transferase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB S.X. H.G.
0.94 96.7 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.93 96.4 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.93 96.4 At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.93 96.4 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.89 94.6 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. S.X. H.G.
0.84 91.9 At5g37690 833748 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.73 85.5 At1g74460 843787 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.71 84.2 At4g38080 829964 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
149.1 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
127.8 99.9 GSM131378 AtGen_6-5522_Genotoxicstress-Roots-12.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
106.9 99.9 E-MEXP-828-raw-cel-1156922438
85.8 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
85.2 99.9 GSM184846 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
77.1 99.9 E-MEXP-791-raw-cel-1122937614
68.5 99.9 GSM75512 Col-0 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
62.5 99.8 E-MEXP-722-raw-cel-1062243183
61.2 99.8 GSM131377 AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
59.1 99.8 GSM133122 S0_12H_B GSE5688 AtGenExpress: Response to sulfate limitation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.79 1e-110 400 At1g32910 840185 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB C.G. S.X.
0.67 2e-53 210 At5g16410 831502 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.01 7e-1 36 At5g07820 830675 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.01 3e+0 34 At5g60960 836217 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFM C.G. S.X.
0.00 3e+0 34 At5g15680 831422 binding F:binding;P:biological_process unknown;C:plasma membrane, membrane;MFPO C.G. S.X.
0.01 3e+0 34 At4g33090 829446 APM1 (AMINOPEPTIDASE M1) encodes an aminopeptidase, a ortholog of mouse microsomal AP (EC 3.4.11.2). C.G. S.X.
0.02 3e+0 34 At4g30620 829185 unknown protein F:unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;BOP C.G. S.X.
0.01 3e+0 34 At3g60730 825244 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.02 3e+0 34 At3g56980 824865 BHLH039 F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.9148.1.S1_at BI321527 - - 7e-1 At2g25185 - C.G. S.X.
0.02 8e-2 38 Hordeum vulgare Contig13052_at Contig13052 - - 3e-1 At5g63150 unknown protein C.G. S.X.
0.02 9e-2 40 Oryza sativa OsAffx.28610.1.S1_at - - - 0 C.G. S.X.
0.04 6e-2 40 Populus trichocarpa PtpAffx.207452.1.S1_at pmrna14793 hypothetical protein - 3e-2 At1g78990 transferase family protein C.G. S.X.
0.02 4e-2 40 Triticum aestivum TaAffx.81987.1.S1_at CA679335 - - 1e+0 At5g14410 unknown protein C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1614329_s_at BQ800278 hypothetical protein LOC100264072 - 2e+0 At5g25640 - C.G. S.X.
0.02 1e+0 34 Zea mays Zm.2361.1.A1_at BM381388 hypothetical protein LOC100191552 - 3e-17 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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