Gene omics information

Query gene ID At1g78970
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2115.8At1g78970844237LUP1 (LUPEOL SYNTHASE 1)Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation.S.X.H.G.
0.5773.8At1g57750842150CYP96A15 (CYTOCHROME P450 96 A1)Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.S.X.H.G.
0.4050.8At1g78950844234beta-amyrin synthase, putativeF:beta-amyrin synthase activity;P:unknown;C:unknown;BPOFMAS.X.H.G.
0.4050.8At3g59845825154NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOFMPAS.X.H.G.
0.4050.8At4g33790829521CER4 (ECERIFERUM 4)Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces.S.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
103.599.9GSM133820Yang_1-5_young-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
93.999.9GSM133818Yang_1-3_young-pod_Rep2_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
64.199.8GSM131600ATGE_40_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
58.699.8GSM131602ATGE_40_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
55.899.8GSM131601ATGE_40_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.780926At1g78960844236ATLUP2Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin.C.G.S.X.
0.462e-104381At1g78950844234beta-amyrin synthase, putativeF:beta-amyrin synthase activity;P:unknown;C:unknown;BPOFMAC.G.S.X.
0.647e-73276At1g66960843014lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putativeF:lupeol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:unknown;BPOFMC.G.S.X.
0.554e-37157At1g78955844235CAMS1 (Camelliol C synthase 1)F:beta-amyrin synthase activity;P:unknown;C:unknown;BPOFMC.G.S.X.
0.143e-1687At1g78480844184prenyltransferase/squalene oxidase repeat-containing proteinF:catalytic activity;P:unknown;C:endomembrane system;PFMOBC.G.S.X.
0.111e-965At4g15370827203BARS1 (BARUOL SYNTHASE 1)Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings.C.G.S.X.
0.115e-963At5g48010834852THAS1 (THALIANOL SYNTHASE 1)Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.C.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.152e-24115Glycine maxGma.16877.1.S1_atAY095999.1beta-amyrin synthase-7e-30At1g78955CAMS1 (Camelliol C synthase 1)C.G.S.X.
0.054e-240Hordeum vulgareContig11705_atContig11705--3e-29At2g07050CAS1 (cycloartenol synthase 1)C.G.S.X.
0.042e-346Oryza sativaOs02g0139500AK103080.1-Cycloartenol synthase (EC (cycloartenol synthase 1)C.G.S.X.
0.178e-1893Populus trichocarpaPtpAffx.224583.1.S1_atpmrna43248hypothetical protein-2e-26At1g78955CAMS1 (Camelliol C synthase 1)C.G.S.X.
0.031e+036Triticum aestivumTa.9982.1.S1_atCA599875--9e-32At2g07050CAS1 (cycloartenol synthase 1)C.G.S.X.
0.084e-1375Vitis vinifera1614893_atCF568825--1e-3At1g78950beta-amyrin synthase, putativeC.G.S.X.
0.033e-240Zea maysZm.5697.2.S1_atAI834433--5e-25At2g07050CAS1 (cycloartenol synthase 1)C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0019745The chemical reactions and pathways resulting in the formation of pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00419Link to KaPPA-View 4Triterpenoid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage