CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g78960

Gene name ATLUP2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.59 74.7 At1g78960 844236 ATLUP2 Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin. S.X. H.G.
0.88 94.0 At2g42990 818901 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.85 92.4 At1g58430 842212 RXF26 Encodes an anther-specific proline-rich protein. S.X. H.G.
0.83 91.4 At5g55720 835666 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.81 90.4 At1g12570 837814 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA S.X. H.G.
0.81 90.4 At1g63710 842675 CYP86A7 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. S.X. H.G.
0.81 90.4 At5g45960 834636 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.80 89.8 At2g04570 814999 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.80 89.8 At5g33370 833315 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.79 89.1 At1g01600 839347 CYP86A4 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
212.9 100.0 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
211.7 100.0 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
193.5 100.0 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
139.3 99.9 GSM131585 ATGE_34_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
133.7 99.9 GSM131587 ATGE_34_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
126.1 99.9 GSM131586 ATGE_34_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
104.0 99.9 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
99.5 99.9 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
99.4 99.9 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
87.0 99.9 E-MEXP-285-raw-cel-440783335
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.78 0 934 At1g78970 844237 LUP1 (LUPEOL SYNTHASE 1) Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation. C.G. S.X.
0.79 0 841 At1g66960 843014 lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putative F:lupeol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:unknown;BPOFM C.G. S.X.
0.21 2e-79 297 At1g78480 844184 prenyltransferase/squalene oxidase repeat-containing protein F:catalytic activity;P:unknown;C:endomembrane system;PFMOB C.G. S.X.
0.54 5e-46 186 At1g78950 844234 beta-amyrin synthase, putative F:beta-amyrin synthase activity;P:unknown;C:unknown;BPOFMA C.G. S.X.
0.59 7e-39 163 At1g78955 844235 CAMS1 (Camelliol C synthase 1) F:beta-amyrin synthase activity;P:unknown;C:unknown;BPOFM C.G. S.X.
0.03 8e-5 50 At2g07050 815275 CAS1 (cycloartenol synthase 1) Involved in the biosynthesis of brassinosteroids. Catalyzes the reaction from epoxysqualene to cycloartenol. C.G. S.X.
0.03 2e-2 42 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 5e-10 67 Glycine max Gma.16877.1.S1_at AY095999.1 beta-amyrin synthase - 7e-30 At1g78955 CAMS1 (Camelliol C synthase 1) C.G. S.X.
0.03 2e+0 34 Hordeum vulgare Contig11705_at Contig11705 - - 3e-29 At2g07050 CAS1 (cycloartenol synthase 1) C.G. S.X.
0.03 2e-3 46 Oryza sativa OsAffx.31039.1.S1_at - - - 0 C.G. S.X.
0.14 2e-9 65 Populus trichocarpa PtpAffx.89457.1.A1_at DN492169 hypothetical protein - 5e-22 At1g78955 CAMS1 (Camelliol C synthase 1) C.G. S.X.
0.03 1e+0 36 Triticum aestivum Ta.9982.1.S1_at CA599875 - - 9e-32 At2g07050 CAS1 (cycloartenol synthase 1) C.G. S.X.
0.06 1e-6 54 Vitis vinifera 1614893_at CF568825 - - 1e-3 At1g78950 beta-amyrin synthase, putative C.G. S.X.
0.02 2e-3 44 Zea mays Zm.5697.2.S1_at AI834433 - - 5e-25 At2g07050 CAS1 (cycloartenol synthase 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0016104 The chemical reactions and pathways resulting in the formation of triterpenoid compounds, terpenoids with six isoprene units.
X GO:0019745 The chemical reactions and pathways resulting in the formation of pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00419 Triterpenoid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00100 Steroid biosynthesis
01062 Biosynthesis of terpenoids and steroids
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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