CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g78940

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.94 96.7 At1g78940 844233 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.67 81.6 At1g52240 841654 ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11) Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily . S.X. H.G.
0.67 81.6 At3g20220 821566 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO S.X. H.G.
0.66 80.1 At5g15600 831412 SP1L4 (SPIRAL1-LIKE4) SPIRAL1-LIKE4 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion. S.X. H.G.
0.66 80.1 At3g61160 825288 shaggy-related protein kinase beta / ASK-beta (ASK2) F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA S.X. H.G.
0.65 79.6 At2g13350 815821 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF S.X. H.G.
0.64 78.9 At2g26490 817190 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPA S.X. H.G.
0.64 78.9 At3g54800 824645 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein F:phosphoinositide binding;P:signal transduction;C:unknown;POM S.X. H.G.
0.64 78.9 At5g19360 832056 CPK34 member of Calcium Dependent Protein Kinase S.X. H.G.
0.63 78.1 At5g20410 832163 MGD2 Encodes a type B monogalactosyldiacylglycerol (MGDG) synthase. Strongly induced by phosphate deprivation, and in non-photosynthetic tissues. Does not contribute to galactolipid synthesis under Pi-sufficient conditions but does under Pi starvation. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
153.5 99.9 GSM154503 Arabidopsis desiccated mature pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
145.7 99.9 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
144.2 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
138.6 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
128.9 99.9 E-ATMX-35-raw-cel-1574334880
128.7 99.9 E-MEXP-1138-raw-cel-1432773226
126.3 99.9 E-MEXP-1138-raw-cel-1432772682
123.4 99.9 E-ATMX-35-raw-cel-1574334848
120.7 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
118.2 99.9 E-MEXP-1138-raw-cel-1432773194
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.58 9e-174 611 At1g16760 838247 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.15 6e-27 123 At4g31230 829250 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.10 8e-17 89 At2g24370 816973 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.16 8e-14 79 At3g20200 821564 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.07 7e-8 59 At5g26150 832684 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.08 4e-6 54 At5g35380 833499 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.08 7e-5 50 At5g12000 831073 kinase F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
0.02 3e-4 48 At1g17540 838328 kinase F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.05 1e-3 46 At1g72760 843608 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-2 42 Glycine max Gma.7517.1.S1_at BU548272 - - 2e-9 At2g45910 protein kinase family protein / U-box domain-containing protein C.G. S.X.
0.01 3e-2 40 Hordeum vulgare Contig17914_at Contig17914 - - 1e+0 At4g20370 TSF (TWIN SISTER OF FT) C.G. S.X.
0.05 2e-6 56 Oryza sativa Os06g0191900 9634.m00875 - Protein kinase family protein 8e-8 At4g31230 protein kinase family protein C.G. S.X.
0.11 2e-6 56 Populus trichocarpa PtpAffx.206663.1.S1_at pmrna13224 hypothetical protein - 5e-19 At5g26150 protein kinase family protein C.G. S.X.
0.02 1e+0 36 Triticum aestivum TaAffx.65130.1.S1_at BJ259878 - - 7e-2 At5g02470 DPA C.G. S.X.
0.07 1e-12 73 Vitis vinifera 1619378_at AY427199.1 - - 4e-7 At5g26150 protein kinase family protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.6141.1.S1_at CA399949 MAPK - 4e-15 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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