CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g78780

Gene name pathogenesis-related family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At1g78780 844214 pathogenesis-related family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFM S.X. H.G.
0.40 50.8 At2g14210 815907 AGL44 (AGAMOUS-LIKE 44) MADS box gene, transcription factor S.X. H.G.
0.11 4.1 At5g65040 836628 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.04 0.9 At5g59700 836091 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.03 0.6 At5g58500 835963 LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5) F:molecular_function unknown;P:biological_process unknown;C:unknown;PM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
133.8 99.9 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
133.2 99.9 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
121.3 99.9 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
108.9 99.9 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
105.8 99.9 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
100.6 99.9 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
90.5 99.9 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
85.3 99.9 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
80.1 99.9 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
78.7 99.9 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-3 42 At2g35670 818136 FIS2 (FERTILIZATION INDEPENDENT SEED 2) Encodes a negative regulator of seed development in the absence of pollination. In the ovule, the FIS2 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. C.G. S.X.
0.02 1e+0 34 At5g65250 836650 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BMPO C.G. S.X.
0.02 1e+0 34 At3g47600 823914 ATMYB94 (MYB DOMAIN PROTEIN 94) Encodes a putative transcription factor (MYB94). C.G. S.X.
0.01 4e+0 32 At5g46330 834676 FLS2 (FLAGELLIN-SENSITIVE 2) Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response. FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB. C.G. S.X.
0.01 4e+0 32 At5g62190 836340 PRH75 DEAD/DEAH box RNA helicase PRH75 C.G. S.X.
0.02 4e+0 32 At5g27140 832772 SAR DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:membrane;MOFAPBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-21 103 Glycine max GmaAffx.3697.1.S1_at BE820647 - - 3e-33 At1g78780 pathogenesis-related family protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig25415_at Contig25415 - - 3e-4 At2g24440 selenium binding C.G. S.X.
0.03 2e+0 34 Oryza sativa Os08g0113600 AK061571.1 - - 8e-3 At5g27440 unknown protein C.G. S.X.
0.39 2e-27 123 Populus trichocarpa PtpAffx.94770.1.A1_at CV281703 hypothetical protein - 2e-27 At1g78780 pathogenesis-related family protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.4463.1.S1_at CA740979 - - 1e-3 At5g65390 AGP7 C.G. S.X.
0.30 4e-16 83 Vitis vinifera 1612518_at CF372327 hypothetical protein LOC100243598 - 2e-30 At1g78780 pathogenesis-related family protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.10087.1.A1_at BM381624 - - 1e+0 At3g12990 RRP45a (Ribonuclease PH45a) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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