CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g78610

Gene name MSL6 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 6)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g78610 844197 MSL6 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 6) F:unknown;P:unknown;C:plasma membrane, membrane;BOFAP S.X. H.G.
0.33 38.1 At2g47970 819409 NPL4 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.29 30.3 At2g44060 819011 late embryogenesis abundant family protein / LEA family protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, response to cadmium ion, response to desiccation;C:plasma membrane, membrane;PBOA S.X. H.G.
0.25 22.6 At4g24550 828557 clathrin adaptor complexes medium subunit family protein F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat, clathrin adaptor complex;MFOP S.X. H.G.
0.01 0.2 At4g11800 826786 hydrolase/ protein serine/threonine phosphatase F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endoplasmic reticulum;BPO S.X. H.G.
0.01 0.2 At5g63110 836431 HDA6 (HISTONE DEACETYLASE 6) RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
67.1 99.8 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
32.3 99.7 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
25.7 99.7 E-MEXP-475-raw-cel-680982449
25.3 99.6 GSM311285 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
24.1 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
21.9 99.6 E-MEXP-475-raw-cel-680982503
21.3 99.6 GSM311274 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
20.5 99.6 GSM184916 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
19.7 99.6 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
19.5 99.6 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 1e-25 119 At1g53470 841782 MSL4 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4) F:unknown;P:unknown;C:plasma membrane, membrane;BOFPA C.G. S.X.
0.20 3e-20 101 At3g14810 820710 MSL5 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 5) F:unknown;P:unknown;C:membrane;BOFAPM C.G. S.X.
0.08 2e-11 71 At2g17000 816203 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;BOFPA C.G. S.X.
0.12 1e-9 65 At2g17010 816204 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;BOPFAM C.G. S.X.
0.01 2e-2 42 At5g65630 836689 GTE7 (Global transcription factor group E 7) This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE7 show some resistance to agrobacterium-mediated root transformation. C.G. S.X.
0.01 2e-2 42 At3g21540 821708 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:nucleolus, heterotrimeric G-protein complex;MFOPBA C.G. S.X.
0.01 2e-2 42 At3g52540 824420 OFP18 (OVATE FAMILY PROTEIN 18) F:unknown;P:biological_process unknown;C:chloroplast;MPOF C.G. S.X.
0.01 8e-2 40 At1g65960 842908 GAD2 (GLUTAMATE DECARBOXYLASE 2) glutamate decarboxylase (GAD2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-6 56 Glycine max GmaAffx.71257.1.S1_at BI426559 - - 9e-7 At3g14810 MSL5 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 5) C.G. S.X.
0.03 1e-5 52 Hordeum vulgare Contig9205_at Contig9205 - - 5e-4 At1g53470 MSL4 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4) C.G. S.X.
0.03 7e-4 48 Oryza sativa OsAffx.27550.1.S1_at - - - 0 C.G. S.X.
0.17 9e-21 103 Populus trichocarpa PtpAffx.209920.1.S1_at pmrna19550 hypothetical protein - 4e-21 At1g78610 MSL6 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 6) C.G. S.X.
0.05 5e-3 44 Triticum aestivum Ta.6041.1.A1_x_at BJ256589 - - 6e-7 At2g17010 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1618512_at BQ795722 hypothetical protein LOC100252904 - 5e-7 At5g06330 hairpin-responsive protein, putative (HIN1) C.G. S.X.
0.01 2e+0 34 Zea mays Zm.7612.1.A1_at BM079194 hypothetical protein LOC100274866 - 7e-3 At4g17670 senescence-associated protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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