CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g78500

Gene name pentacyclic triterpene synthase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At1g78500 844186 pentacyclic triterpene synthase, putative Encodes a protein with pentacyclic triterpene synthase activity. In addition to the compounds lupeol, α-amyrin and bauerenol, this enzyme was also shown to produce two seco-triterpenes: α- and β-seco-amyrin. S.X. H.G.
0.78 88.6 At1g65880 842900 BZO1 (BENZOYLOXYGLUCOSINOLATE 1) Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds. S.X. H.G.
0.75 86.9 At5g49190 834978 SUS2 (SUCROSE SYNTHASE 2) Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency. S.X. H.G.
0.71 84.2 At3g12203 820399 scpl17 (serine carboxypeptidase-like 17) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB S.X. H.G.
0.67 81.6 At3g44460 823571 DPBF2 basic leucine zipper transcription factor (BZIP67), identical to basic leucine zipper transcription factor GI:18656053 from (Arabidopsis thaliana); identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052. Located in the nucleus and expressed during seed maturation in the cotyledons. S.X. H.G.
0.63 78.1 At1g18100 838390 E12A11 E12A11 protein (E12A11) S.X. H.G.
0.63 78.1 At5g07500 830642 PEI1 Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation. S.X. H.G.
0.41 52.4 At5g09640 830823 SCPL19 encodes a serine carboxypeptidase-like (SCPL) protein. Mutants accumulate sinapoylglucose instead of sinapoylcholine, and have increased levels of choline and decreased activity of the enzyme sinapoylglucose:choline sinapoyltransferase. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
401.2 100.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
283.4 100.0 E-ATMX-1-raw-cel-1112746267
230.3 100.0 E-ATMX-1-raw-cel-1112746154
226.4 100.0 GSM131698 ATGE_81_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
205.3 100.0 GSM131699 ATGE_81_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
203.9 100.0 E-ATMX-1-raw-cel-1112746095
203.9 100.0 E-ATMX-1-raw-cel-1112746209
175.6 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
172.6 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
172.0 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 2e-175 617 At4g15370 827203 BARS1 (BARUOL SYNTHASE 1) Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings. C.G. S.X.
0.69 5e-148 525 At5g42600 834267 MRN1 (MARNERAL SYNTHASE) Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral. C.G. S.X.
0.66 2e-116 420 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. C.G. S.X.
0.69 3e-103 377 At5g36150 833612 ATPEN3 (putative pentacyclic triterpene synthase 3) F:lupeol synthase activity, catalytic activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFM C.G. S.X.
0.65 8e-85 315 At4g15340 827200 ATPEN1 (ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1) Encodes a protein that catalyzes the production of the tricyclic triterpene arabidiol when expressed in yeast. C.G. S.X.
0.10 1e-6 56 At1g78970 844237 LUP1 (LUPEOL SYNTHASE 1) Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation. C.G. S.X.
0.03 2e-5 52 At2g07050 815275 CAS1 (cycloartenol synthase 1) Involved in the biosynthesis of brassinosteroids. Catalyzes the reaction from epoxysqualene to cycloartenol. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-3 46 Glycine max Gma.16877.1.S1_at AY095999.1 beta-amyrin synthase - 7e-30 At1g78955 CAMS1 (Camelliol C synthase 1) C.G. S.X.
0.01 2e+0 34 Hordeum vulgare EBro08_SQ004_E04_at EBro08_SQ004_E04 - - 3e-3 At1g67195 MIR414 (MICRORNA 414) C.G. S.X.
0.01 9e-3 44 Oryza sativa Os.12282.1.S1_a_at - - - 0 C.G. S.X.
0.06 4e-7 57 Populus trichocarpa PtpAffx.225828.1.S1_s_at pmrna45440 hypothetical protein - 6e-24 At1g78955 CAMS1 (Camelliol C synthase 1) C.G. S.X.
0.02 3e-1 38 Triticum aestivum TaAffx.79399.1.S1_at CA716604 - - 2e+1 At5g19240 unknown protein C.G. S.X.
0.03 6e-3 42 Vitis vinifera 1608014_at CF512552 hypothetical protein LOC100249623 - 7e-14 At1g78955 CAMS1 (Camelliol C synthase 1) C.G. S.X.
0.02 5e-1 36 Zea mays Zm.5697.2.S1_at AI834433 - - 5e-25 At2g07050 CAS1 (cycloartenol synthase 1) C.G. S.X.
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Biological processes

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ECC GO ID Process Name
C GO:0019745 The chemical reactions and pathways resulting in the formation of pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00419 Triterpenoid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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