Gene omics information

Query gene ID At1g78480
Gene name prenyltransferase/squalene oxidase repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2319.3At1g78480844184prenyltransferase/squalene oxidase repeat-containing proteinF:catalytic activity;P:unknown;C:endomembrane system;PFMOBS.X.H.G.
0.5974.7At3g05430819708PWWP domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
0.5065.3At2g43310818932unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3541.6At2g36370818210ubiquitin-protein ligaseF:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPFOBVS.X.H.G.
0.3338.1At4g09490826533RNase H domain-containing proteinF:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:endomembrane system;PBOS.X.H.G.
0.135.8At4g24860828589AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;BOMFPAVS.X.H.G.
0.114.1At3g04490819605unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
196.0100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
166.4100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
118.099.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
98.599.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
74.199.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.399.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
65.199.8GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
64.599.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
63.599.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.299.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.215e-80297At1g78960844236ATLUP2Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin.C.G.S.X.
0.217e-30131At1g66960843014lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putativeF:lupeol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:unknown;BPOFMC.G.S.X.
0.149e-1787At1g78970844237LUP1 (LUPEOL SYNTHASE 1)Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation.C.G.S.X.
0.115e-961At1g78950844234beta-amyrin synthase, putativeF:beta-amyrin synthase activity;P:unknown;C:unknown;BPOFMAC.G.S.X.
0.065e-342At1g78955844235CAMS1 (Camelliol C synthase 1)F:beta-amyrin synthase activity;P:unknown;C:unknown;BPOFMC.G.S.X.
0.021e+034At5g23570832422SGS3 (SUPPRESSOR OF GENE SILENCING 3)Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.C.G.S.X.
0.021e+034At5g27350832794SFP1Encodes a sugar-porter family protein that is induced during leaf senescence. The increase in its gene expression during leaf senescence is paralleled by an accumulation of monosaccharides.C.G.S.X.
0.011e+034At5g46260834668disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e+034Glycine maxGmaAffx.39875.1.S1_atBE331706--1e-31At1g78955CAMS1 (Camelliol C synthase 1)C.G.S.X.
0.042e+032Hordeum vulgareContig19400_atContig19400--2e+0At1g78480prenyltransferase/squalene oxidase repeat-containing proteinC.G.S.X.
0.026e-136Oryza sativaOs12g0626000AK109499.1-Hypothetical protein9e-3At3g13570SCL30aC.G.S.X.
0.034e-136Populus trichocarpaPtpAffx.146249.1.S1_s_atCX169389hypothetical protein-9e-11At1g09340CRB (CHLOROPLAST RNA BINDING)C.G.S.X.
0.041e+034Triticum aestivumTa.13649.1.A1_atBQ172310--2e+0At3g51325zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.031e+032Vitis vinifera1608834_atCB348757hypothetical protein LOC100241257-2e-16At5g14030translocon-associated protein beta (TRAPB) family proteinC.G.S.X.
0.048e+030Zea maysZmAffx.1533.1.S1_at40794996-14--3e+0At3g53610ATRAB8C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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