CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g78450

Gene name SOUL heme-binding family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g78450 844181 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:endomembrane system;OMPBA S.X. H.G.
0.40 50.8 At1g28610 839761 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBM S.X. H.G.
0.07 1.9 At1g78995 844240 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.01 0.2 At1g76020 843933 - F:unknown;P:biological_process unknown;C:cell wall, vacuole;BPOMF S.X. H.G.
0.01 0.2 At5g39830 833979 DEG8 Encodes DEG8. Forms a hexamer with DEG5 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). Recombinant DEG8 is proteolytically active toward both a model substrate (beta-casein) and photodamaged D1 protein of photosystem II. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
118.1 99.9 GSM134373 St.Clair_1-34_346_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
116.6 99.9 GSM134370 St.Clair_1-31_343_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
103.8 99.9 E-TABM-52-raw-cel-1583682846
101.6 99.9 GSM134365 St.Clair_1-26_371_Cvi-1_0.02%-silwet_Rep2_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
95.8 99.9 GSM134448 St.Clair_1-73_291_Mt-0_0.02%-silwet_Rep1_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
81.3 99.9 GSM134358 St.Clair_1-19_336_Cvi-1_0.02%-silwet_Rep1_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
78.4 99.9 GSM134362 St.Clair_1-23_363_Cvi-1_0.02%-silwet_Rep2_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
74.2 99.9 GSM134374 St.Clair_1-35_373_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
74.2 99.9 GSM134375 St.Clair_1-36_454b_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
71.3 99.9 GSM260879 A2-Greco-WT GSE10322 Higher order transcriptional regulation conferred by the bountiful gain of function mutant
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.18 2e-5 50 At1g17100 838280 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:plasma membrane, vacuole;OMPBA C.G. S.X.
0.02 8e-2 38 At4g01240 827909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 8e-2 38 At3g58330 825002 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBF C.G. S.X.
0.01 1e+0 34 At5g42400 834246 SDG25 (SET DOMAIN PROTEIN 25) F:unknown;P:unknown;C:unknown;MOPFBAV C.G. S.X.
0.02 1e+0 34 At4g05020 825844 NDB2 (NAD(P)H dehydrogenase B2) F:disulfide oxidoreductase activity, oxidoreductase activity, FAD binding;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion;BOFPAM C.G. S.X.
0.02 1e+0 34 At3g56940 824861 CRD1 (COPPER RESPONSE DEFECT 1) Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site. C.G. S.X.
0.01 1e+0 34 At2g22480 816781 PFK5 (PHOSPHOFRUCTOKINASE 5) F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMFPAV C.G. S.X.
0.01 1e+0 34 At1g16800 838251 tRNA-splicing endonuclease positive effector-related F:poly(U) binding;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.01 5e+0 32 At5g65500 836676 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ ubiquitin-protein ligase F:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;PMOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max PsAffx.CL1990Contig1_at PsAffx.CL1990Contig1 - - 1e+0 At1g78450 SOUL heme-binding family protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEf0011J16r2_at HVSMEf0011J16r2 - - 1e+0 At1g58100 TCP family transcription factor, putative C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.30514.1.S1_at - - - 0 C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.121275.1.A1_at CV249035 - - 4e+0 At5g20180 ribosomal protein L36 family protein C.G. S.X.
0.03 3e-1 36 Triticum aestivum TaAffx.84527.1.S1_at CA634795 - - 3e-1 At1g78450 SOUL heme-binding family protein C.G. S.X.
0.04 4e-1 34 Vitis vinifera 1610948_at CB344798 - - 5e-1 At1g78450 SOUL heme-binding family protein C.G. S.X.
0.03 9e+0 30 Zea mays Zm.6063.2.S1_at AI668193 Vacuolar proton pump homolog1 - 2e-10 At1g15690 AVP1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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