CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g78380

Gene name ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g78380 844174 ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19) Encodes a glutathione transferase that is a member of Tau GST gene family. Expression is induced by drought stress, oxidative stress, and high doses of auxin and cytokinin. naming convention according to Wagner et al. (2002) The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. S.X. H.G.
0.66 80.1 At4g11150 826716 TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis. S.X. H.G.
0.64 78.9 At4g29350 829056 PFN2 (PROFILIN 2) Encodes profilin2, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Expressed in vegetative organs. The first intron of PRF2 enhances gene expression. S.X. H.G.
0.61 76.7 At1g01800 839259 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:plant-type cell wall;BOMFPA S.X. H.G.
0.61 76.7 At5g64400 836561 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MFPOB S.X. H.G.
0.57 73.8 At1g07890 837304 APX1 (ascorbate peroxidase 1) Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. S.X. H.G.
0.55 70.6 At3g55440 824710 TPI (TRIOSEPHOSPHATE ISOMERASE) Encodes triosephosphate isomerase. S.X. H.G.
0.55 70.6 At1g26550 839195 peptidyl-prolyl cis-trans isomerase PPIC-type family protein F:isomerase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA S.X. H.G.
0.55 70.6 At4g02620 828221 vacuolar ATPase subunit F family protein F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:plasma membrane, vacuole;MFOPA S.X. H.G.
0.54 69.5 At3g48140 823969 senescence-associated protein, putative F:molecular_function unknown;P:leaf senescence;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.8 99.3 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.2 99.2 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.0 99.2 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.0 99.2 E-MEXP-807-raw-cel-1173273032
9.2 99.1 GSM184487 Epidermis&Cortex root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.8 99.0 GSM184486 Epidermis&Cortex root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.6 99.0 GSM291128 root - 08% oxygen - 48h - B GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
8.3 99.0 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.1 98.9 GSM184489 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.1 98.9 GSM184479 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.58 3e-57 222 At1g78340 844169 ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.43 2e-36 153 At1g78320 844167 ATGSTU23 (GLUTATHIONE S-TRANSFERASE TAU 23) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.61 3e-32 139 At1g17170 838288 ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.65 5e-28 125 At1g78360 844172 ATGSTU21 (GLUTATHIONE S-TRANSFERASE TAU 21) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.56 7e-27 121 At1g78370 844173 ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.54 1e-25 117 At1g17180 838289 ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.24 1e-16 87 At1g17190 838290 ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.08 4e-10 65 At2g29460 817495 ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.08 3e-7 56 At3g43800 823491 ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 9e-15 81 Glycine max Gma.1917.1.S1_at AF243365.1 glutathione S-transferase - 9e-15 At1g78380 ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19) C.G. S.X.
0.03 6e-1 34 Hordeum vulgare Contig7448_at Contig7448 - - 1e-1 At1g78340 ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22) C.G. S.X.
0.03 3e+0 34 Oryza sativa Os07g0152700 9635.m00518 - Glutathione S-transferase GST 20 (EC 2.5.1.18) 3e-4 At1g59700 ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16) C.G. S.X.
0.17 3e-5 50 Populus trichocarpa Ptp.4101.1.S1_s_at BU837371 - - 7e-8 At1g78340 ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22) C.G. S.X.
0.03 3e-1 36 Triticum aestivum TaAffx.75901.2.S1_at CA724409 - - 8e-1 At4g29460 phospholipase A2 gamma, secretory low molecular weight C.G. S.X.
0.18 2e-6 52 Vitis vinifera 1613204_at AF501625.1 glutathione-S-transferase /// hypothetical protein LOC100249549 /// hypothetical LOC100267917 - 4e-8 At1g17180 ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25) C.G. S.X.
0.03 4e-2 38 Zea mays Zm.559.1.A1_at AF244699.1 glutathione S-transferase GST 34 - 3e-2 At5g62480 ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
X GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
X GO:0042631 A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of water.
S GO:0009407 The chemical reactions and pathways resulting in the breakdown of toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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