CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g78050

Gene name PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.55 70.6 At1g78050 844140 PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE) F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:response to nitrate, metabolic process;C:chloroplast;BOMFPA S.X. H.G.
0.55 70.6 At1g30510 839930 ATRFNR2 (ROOT FNR 2) Encodes a root-type ferredoxin:NADP(H) oxidoreductase. S.X. H.G.
0.44 57.2 At2g48080 819420 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.29 30.3 At3g47980 823953 integral membrane HPP family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;BOFP S.X. H.G.
0.15 7.8 At5g41670 834169 6-phosphogluconate dehydrogenase family protein F:in 6 functions;P:response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus;C:mitochondrion, chloroplast;BOMPFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
197.0 100.0 GSM231197 wild-type at T0.5, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
142.4 99.9 GSM231196 wild-type at T0.5, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
105.3 99.9 GSM231198 wild-type at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
84.8 99.9 GSM184508 Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
63.4 99.8 GSM184491 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
57.8 99.8 GSM231204 chl1 at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
46.7 99.8 E-MEXP-828-raw-cel-1156922794
43.7 99.8 GSM231203 chl1 at T0.5, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
42.0 99.8 GSM184538 Whole roots 2hr KCl control treated then frozen, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
40.8 99.8 E-MEXP-828-raw-cel-1156922731
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.65 0 654 At1g22170 838822 phosphoglycerate/bisphosphoglycerate mutase family protein F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:glycolysis, metabolic process;C:chloroplast;BOMFPA C.G. S.X.
0.01 1e-1 38 At2g31970 817756 RAD50 F:zinc ion binding, ATP binding, nuclease activity;P:DNA repair;C:chromosome, Mre11 complex;MOBFPAV C.G. S.X.
0.01 5e-1 36 At4g11670 826772 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMF C.G. S.X.
0.01 5e-1 36 At3g50590 824223 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:plasma membrane;MBFOPV C.G. S.X.
0.02 5e-1 36 At1g79650 844304 RAD23 putative DNA repair protein RAD23 C.G. S.X.
0.01 2e+0 34 At5g48230 834876 ACAT2 (ACETOACETYL-COA THIOLASE 2) F:acetyl-CoA C-acetyltransferase activity, catalytic activity;P:embryonic development ending in seed dormancy;C:peroxisome, plasma membrane;BOMFAP C.G. S.X.
0.02 2e+0 34 At5g23170 832381 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-8 61 Glycine max GmaAffx.1848.1.S1_at BU549203 - - 8e-9 At1g78050 PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE) C.G. S.X.
0.04 4e-3 42 Hordeum vulgare Contig18878_at Contig18878 - - 4e-3 At1g22170 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
0.17 7e-17 89 Oryza sativa Os02g0751800 AK101802.1 - Phosphoglycerate/bisphosphoglycerate mutase familyprotein 3e-34 At1g22170 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
0.51 2e-47 190 Populus trichocarpa PtpAffx.201911.1.S1_s_at pmrna3807 hypothetical protein - 1e-47 At1g78050 PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE) C.G. S.X.
0.12 6e-7 56 Triticum aestivum TaAffx.84388.1.S1_at CA637951 - - 3e-7 At1g78050 PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE) C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1618925_at CF514837 - - 2e-1 At3g24310 MYB305 (myb domain protein 305) C.G. S.X.
0.20 3e-19 95 Zea mays Zm.6438.1.A1_at BM268459 hypothetical protein LOC100191671 - 1e-30 At1g22170 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010167 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus.
C GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00008 Serine and glycine metabolism
00111 Glycolysis/gluconeogenesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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