Gene omics information

Query gene ID At1g78030
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6478.9At1g78030844138-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6781.6At5g17200831584glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVAS.X.H.G.
0.6579.6At2g18070816319unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6478.9At5g58180835930ATYKT62member of YKT6 Gene FamilyS.X.H.G.
0.5673.0At3g24640822060lyaseF:lyase activity;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5570.6At2g113903767808transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5570.6At5g37900833769seven in absentia (SINA) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus, plasma membrane;MPOS.X.H.G.
0.5570.6At3g58300824999unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.5570.6At2g03130814842ribosomal protein L12 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFS.X.H.G.
0.5469.5At1g57570842133jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
339.6100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
302.7100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
292.3100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
258.6100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
221.0100.0GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
212.1100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
199.6100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
192.1100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
162.499.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
155.199.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.051e-22107At4g37900829946glycine-rich proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVAC.G.S.X.
0.053e-756At2g23690816900unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;POC.G.S.X.
0.018e-238At5g39785833974structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBVC.G.S.X.
0.028e-238At1g66170842932MMD1 (MALE MEIOCYTE DEATH 1)encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus.C.G.S.X.
0.021e+034At3g18000821324XPL1 (XIPOTL 1)Arabidopsis thaliana N-methyltransferase-like protein mRNA.C.G.S.X.
0.021e+034At3g07570819948membrane protein, putativeF:dopamine beta-monooxygenase activity;P:histidine catabolic process;C:membrane;PMFOBC.G.S.X.
0.051e+034At2g04370814976unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.021e+034At1g64860842794SIGA (SIGMA FACTOR A)Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzymeC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e+034Glycine maxGmaAffx.92711.1.S1_x_atCF808436--3e-16At2g19900ATNADP-ME1 (NADP-malic enzyme 1)C.G.S.X.
0.043e+032Hordeum vulgareContig4172_atContig4172--2e-2At3g52090NRPB11C.G.S.X.
Os07g04787000.036e-1Oryza sativaOs04g05044009635.m02880--2e-1At1g78030-C.G.S.X.
0.065e-136Populus trichocarpaPtpAffx.24696.1.A1_atCV249950--7e-2At1g67623F-box family proteinC.G.S.X.
0.031e+034Triticum aestivumTaAffx.109242.1.S1_atCA678136--2e+1At5g20820auxin-responsive protein-relatedC.G.S.X.
0.032e+032Vitis vinifera1619377_atCF372632hypothetical protein LOC100244120-1e-3At3g28940avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putativeC.G.S.X.
0.032e+032Zea maysZmAffx.173.1.S1_atAI668250--1e+1At5g38060unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage