CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g77790

Gene name glycosyl hydrolase family 17 protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g77790 844116 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POF S.X. H.G.
0.58 73.8 At1g22290 838836 14-3-3 protein GF14, putative (GRF10) F:protein phosphorylated amino acid binding;P:unknown;C:unknown;MPOF S.X. H.G.
0.58 73.8 At5g04400 830319 anac077 (Arabidopsis NAC domain containing protein 77) F:DNA binding;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POBM S.X. H.G.
0.57 73.8 At4g11490 826754 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.55 70.6 At3g45460 823686 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.53 68.6 At3g13140 820502 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:cellular_component unknown;PFMBO S.X. H.G.
0.52 67.4 At1g22720 838878 wall-associated kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, calcium ion binding, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOFVB S.X. H.G.
0.52 67.4 At3g18540 821385 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFVPA S.X. H.G.
0.51 66.3 At3g18900 821423 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOM S.X. H.G.
0.50 65.3 At1g60930 842384 ATRECQ4B (ARABIDOPSIS RECQ HELICASE L4B) AtRECQ4B mutant showed no sensitivity to DNA damaging agents.Involved in homologous recombination. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
404.0 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
359.0 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
272.1 100.0 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
132.0 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
128.8 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
127.2 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
116.4 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
115.2 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
115.1 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
109.7 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 8e-3 42 At1g53625 841798 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA C.G. S.X.
0.04 3e-2 40 At3g44950 823630 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFVA C.G. S.X.
0.02 1e-1 38 At5g20340 832156 BG5 (beta-1,3-glucanase 5) Encodes a putative beta 1,3-glucanase. C.G. S.X.
0.04 1e-1 38 At5g20330 832155 BETAG4 F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO C.G. S.X.
0.02 5e-1 36 At4g26070 828713 MEK1 (MAP KINASE/ ERK KINASE 1) Member of MAP Kinase Kinase. Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding. C.G. S.X.
0.02 5e-1 36 At1g76010 843932 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.01 2e+0 34 At5g11700 831042 glycine-rich protein F:unknown;P:unknown;C:vacuole;BMOPFVA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 36 Glycine max GmaAffx.34785.12.S1_at BQ080091 - - 7e-2 At5g19875 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig7669_s_at Contig7669 - - 1e+0 At5g63905 unknown protein C.G. S.X.
0.03 3e-1 38 Oryza sativa OsAffx.22876.1.S1_at - - - 0 C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.209513.1.S1_at pmrna18847 hypothetical protein - 4e+0 At1g51930 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.19518.1.S1_at CA652910 - - 2e+1 At5g35375 unknown protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1610303_at BQ794090 - - 6e-1 At1g43320 unknown protein C.G. S.X.
0.02 9e-1 34 Zea mays ZmAffx.953.1.S1_at AI833455 - - 1e+1 At5g32440 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00436 Callose/glucan degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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