CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g77640

Gene name AP2 domain-containing transcription factor, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g77640 844099 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. S.X. H.G.
1.00 100.0 At1g21910 838793 AP2 domain-containing transcription factor family protein encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. S.X. H.G.
1.00 100.0 At1g35140 840399 PHI-1 (PHOSPHATE-INDUCED 1) At1g35140 (At1g35140/T32G9_32) mRNA, complete cds S.X. H.G.
1.00 100.0 At4g08950 826473 EXO (EXORDIUM) F:molecular_function unknown;P:response to brassinosteroid stimulus;C:cell wall, plant-type cell wall;PB S.X. H.G.
0.89 94.6 At5g57560 835860 TCH4 (Touch 4) Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
168.5 100.0 E-MEXP-807-raw-cel-1173273170
145.5 99.9 E-MEXP-807-raw-cel-1173273060
114.1 99.9 E-MEXP-807-raw-cel-1173273116
106.4 99.9 E-MEXP-98-raw-cel-320188859
105.6 99.9 E-MEXP-807-raw-cel-1173273196
84.9 99.9 E-MEXP-807-raw-cel-1173273088
79.6 99.9 E-MEXP-807-raw-cel-1173273223
72.2 99.9 E-MEXP-98-raw-cel-320189079
70.1 99.9 E-MEXP-98-raw-cel-320188804
61.9 99.8 E-TABM-224-raw-cel-720977689
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 1e-47 190 At1g21910 838793 AP2 domain-containing transcription factor family protein encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. C.G. S.X.
0.18 7e-15 81 At1g44830 841047 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. C.G. S.X.
0.05 1e-3 44 At1g71520 843492 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. C.G. S.X.
0.04 2e-2 40 At5g46010 834641 homeobox-leucine zipper transcription factor family protein F:transcription factor activity;P:regulation of transcription;C:vacuole;P C.G. S.X.
0.02 9e-2 38 At3g13960 820609 AtGRF5 (GROWTH-REGULATING FACTOR 5) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower. C.G. S.X.
0.02 4e-1 36 At5g39865 833983 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:plasma membrane;POMBF C.G. S.X.
0.03 4e-1 36 At5g38790 833870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF C.G. S.X.
0.02 4e-1 36 At5g23020 832366 IMS2 (2-ISOPROPYLMALATE SYNTHASE 2) methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2). encodes a methylthioalkylmalate synthase involved in the biosynthesis of aliphatic glucosinolates which accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates in Arabidopsis. C.G. S.X.
0.02 4e-1 36 At5g22640 832327 emb1211 (embryo defective 1211) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;OMFBPVA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Glycine max Gma.7780.1.A1_at BU550204 - - 3e-1 At1g76650 calcium-binding EF hand family protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HW01C21u_at HW01C21u - - 3e+0 At5g19480 unknown protein C.G. S.X.
0.03 7e-1 36 Oryza sativa OsAffx.22943.1.S1_at - - - 0 C.G. S.X.
0.14 3e-18 93 Populus trichocarpa PtpAffx.8810.1.S1_at CK096534 AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor - 2e-34 At1g21910 AP2 domain-containing transcription factor family protein C.G. S.X.
0.04 4e-1 36 Triticum aestivum Ta.8426.2.S1_at BJ258563 - - 1e+0 At4g11385 unknown protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1617872_s_at CF404326 hypothetical protein LOC100257528 - 1e-66 At3g04600 tRNA synthetase class I (W and Y) family protein C.G. S.X.
0.03 6e-1 34 Zea mays Zm.13087.2.A1_a_at CF629954 hypothetical protein LOC100276346 - 3e-4 At5g47860 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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