Gene omics information

Query gene ID At1g77480
Gene name nucellin protein, putative
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g77480844084nucellin protein, putativeF:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;POFMS.X.H.G.
0.5368.6At5g08470830746PEX1 (peroxisome 1)an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.S.X.H.G.
0.4659.8At5g56900835792CwfJ-like family protein / zinc finger (CCCH-type) family proteinF:zinc ion binding, catalytic activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPBS.X.H.G.
0.4659.8At3g11540820327SPY (SPINDLY)Encodes a N-acetyl glucosamine transferase that may glycosylate other molecules involved in GA signaling. Contains a tetratricopeptide repeat region, and a novel carboxy-terminal region. SPY acts as both a repressor of GA responses and as a positive regulation of cytokinin signalling. SPY may be involved in reducing ROS accumulation in response to stress.S.X.H.G.
0.4152.4At5g08550830755ILP1 (increased level of polyploidy1-1D)Encodes a transcriptional repressor that is homologous to the C-terminal region of mammalian GC binding factor. It regulates endoreduplication through control of CYC2A expression.S.X.H.G.
0.3846.7At5g06950830586AHBP-1BTranscription factor of the B-ZIP family that has high affinity for C-box motifs. Interacts with NPR1 and may regulate PR gene expression. Phosphorylated by a CK2-like protein in vitro. Phosphorylation is enhanced by salicylic acid treatment.S.X.H.G.
0.3745.0At5g51340835208unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBS.X.H.G.
0.3643.6At3g62130825386epimerase-relatedF:pyridoxal phosphate binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFPAMS.X.H.G.
0.3541.6At4g11110826712SPA2 (SPA1-RELATED 2)Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants.S.X.H.G.
0.3439.8At1g04950839370TAF6 (TBP-ASSOCIATED FACTOR 6)Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
55.899.8GSM133311RIKEN-LI1AGSE5701AtGenExpress: Basic hormone treatment of seeds
43.399.8GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
42.399.8GSM133317RIKEN-LI4AGSE5701AtGenExpress: Basic hormone treatment of seeds
39.299.8GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seeds
36.799.7GSM133313RIKEN-LI2AGSE5701AtGenExpress: Basic hormone treatment of seeds
36.199.7GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibition
35.499.7GSM133119RIKEN-YAMAUCHI2AGSE5687AtGenExpress: Different temperature treatment of seeds
34.899.7GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibition
34.099.7GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibition
32.399.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.125e-550At1g44130841016nucellin protein, putativeF:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMFC.G.S.X.
0.017e-446At5g10550830920GTE2 (Global transcription factor group E 2)This gene is predicted to encode a bromodomain-containing protein. A plant line expressing RNAi constructs targeted against GTE7 shows some resistance to agrobacterium-mediated root transformation.C.G.S.X.
0.027e-446At4g29260829047acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:plasma membrane, vacuole;PBOMC.G.S.X.
0.013e-344At2g24130816947leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.011e-242At4g17620827482glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMFPVAC.G.S.X.
0.021e-242At4g09820826571TT8 (TRANSPARENT TESTA 8)TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.074e-963Glycine maxGma.7093.1.S1_atBU544488--2e-9At1g77480nucellin protein, putativeC.G.S.X.
0.021e+034Hordeum vulgareHVSMEh0096B14f_atHVSMEh0096B14f--2e-2At1g29790-C.G.S.X.
0.036e-344Oryza sativaOs12g0177500AK064771.1-Peptidase A1, pepsin family protein4e-3At1g77480nucellin protein, putativeC.G.S.X.
0.073e-448Populus trichocarpaPtpAffx.1986.1.S1_atCK097794hypothetical protein-1e-4At1g77480nucellin protein, putativeC.G.S.X.
0.035e-240Triticum aestivumTa.5088.1.S1_atBJ271615--1e+0At3g06750hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.083e-652Vitis vinifera1608072_atCB980609hypothetical protein LOC100243763-8e-6At1g77480nucellin protein, putativeC.G.S.X.
0.048e-238Zea maysZm.8351.1.A1_atAI629776hypothetical protein LOC100193320-1e-1At1g77480nucellin protein, putativeC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006508The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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