CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g77280

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g77280 844064 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.33 38.1 At5g52510 835327 scarecrow-like transcription factor 8 (SCL8) F:transcription factor activity;P:regulation of transcription;C:nucleus, cytoplasm;POFMB S.X. H.G.
0.20 14.4 At1g71010 843440 phosphatidylinositol-4-phosphate 5-kinase family protein F:1-phosphatidylinositol-4-phosphate 5-kinase activity, protein binding, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process, cellular protein metabolic process;C:cellular_component unknown;MOFPAB S.X. H.G.
0.14 6.8 At5g56240 835723 - F:unknown;P:biological_process unknown;C:unknown;OMFPB S.X. H.G.
0.13 5.8 At4g24400 828542 CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase. S.X. H.G.
0.13 5.8 At5g66950 836829 catalytic/ pyridoxal phosphate binding F:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:plasma membrane;PMFOBA S.X. H.G.
0.13 5.8 At5g54800 835570 GPT1 glucose6-Phosphate/phosphate transporter 1 S.X. H.G.
0.05 1.1 At4g28370 828953 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:endomembrane system;MPOFV S.X. H.G.
0.04 0.9 At1g08620 837384 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;MFPO S.X. H.G.
0.03 0.6 At4g34680 829620 GATA transcription factor 3, putative (GATA-3) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleolus, nucleus;PFOM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
89.6 99.9 GSM75514 Col-0 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
83.5 99.9 GSM75510 Col-0 6h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
54.0 99.8 GSM265473 Arabidopsis, whole roots, -Fe, 72 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
53.7 99.8 GSM75513 Col-0 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
42.2 99.8 GSM75509 Col-0 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
42.0 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.2 99.8 GSM265471 Arabidopsis, whole roots, -Fe, 48 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
38.3 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.2 99.7 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
34.4 99.7 GSM265474 Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.46 2e-153 543 At1g21590 838760 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.07 2e-8 61 At5g63940 836515 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 2e-5 52 At4g34440 829595 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVA C.G. S.X.
0.01 8e-5 50 At1g79670 844306 RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1) Encodes a receptor-like kinase that does not contain an extracellular leucine-rich repeat domain. A novel type of dominant disease-resistance protein that confers resistance to a broad spectrum of Fusarium races. C.G. S.X.
0.02 5e-3 44 At5g13160 831155 PBS1 (avrPphB susceptible 1) Mutant is defective in perception of Pseudomonas syringae avirulence gene avrPphB. Encodes a putative serine-threonine kinase. C.G. S.X.
0.01 5e-3 44 At4g38830 830038 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 5e-3 44 At3g18810 821414 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OMBPFVA C.G. S.X.
0.01 2e-2 42 At1g56130 842065 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane, membrane;PMOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 7e-6 54 Glycine max GmaAffx.86222.1.S1_at BE023382 - - 4e-11 At5g63940 protein kinase family protein C.G. S.X.
0.02 2e-3 44 Hordeum vulgare Contig17584_at Contig17584 - - 8e-21 At1g26150 PERK10 (PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10) C.G. S.X.
0.05 1e-5 54 Oryza sativa Os03g0839700 9631.m06154 - - 3e-6 At1g77280 protein kinase family protein C.G. S.X.
0.22 2e-55 218 Populus trichocarpa PtpAffx.201843.1.S1_at pmrna3668 hypothetical protein - 2e-55 At1g77280 protein kinase family protein C.G. S.X.
0.04 3e-4 48 Triticum aestivum TaAffx.111907.1.S1_at CA630712 - - 5e-6 At1g09440 protein kinase family protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1614297_at BQ796093 hypothetical protein LOC100264651 - 2e-6 At4g32000 protein kinase family protein C.G. S.X.
0.01 5e-1 36 Zea mays ZmAffx.914.1.A1_at AI770970 - - 2e-20 At5g13160 PBS1 (avrPphB susceptible 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
L GO:0006950 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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