CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g77140

Gene name VPS45 (VACUOLAR PROTEIN SORTING 45)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At1g77140 844050 VPS45 (VACUOLAR PROTEIN SORTING 45) A peripheral membrane protein that associates with microsomal membranes, likely to function in the transport of proteins to the vacuole. It is a member of Sec1p protein family. It may be involved in the regulation of vesicle fusion reactions through interaction with t-SNAREs at the Golgi trans face. S.X. H.G.
0.73 85.5 At3g58050 824974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.69 82.9 At2g41960 818796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.61 76.7 At3g59770 825146 SAC9 Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses. S.X. H.G.
0.60 75.7 At5g07270 830618 ankyrin repeat family protein F:ubiquitin-protein ligase activity, protein binding;P:N-terminal protein myristoylation;C:unknown;MOFBPVA S.X. H.G.
0.60 75.7 At1g12470 837804 Pep3/Vps18/deep orange family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MFOPB S.X. H.G.
0.58 73.8 At4g09630 826549 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVA S.X. H.G.
0.58 73.8 At5g35980 833590 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA S.X. H.G.
0.56 73.0 At5g16280 831488 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;MFOPV S.X. H.G.
0.55 70.6 At5g11040 830971 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.0 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
20.4 99.6 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
20.0 99.6 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.0 99.5 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
16.3 99.5 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.9 99.3 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.5 99.3 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.5 99.3 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.7 99.2 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.6 99.2 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e+0 34 Atmg01190 - - ATPase subunit 1 C.G. S.X.
0.01 3e+0 34 At5g56050 835703 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBVOF C.G. S.X.
0.01 3e+0 34 At5g14860 831338 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF C.G. S.X.
0.01 3e+0 34 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. C.G. S.X.
0.01 3e+0 34 At4g11900 826797 S-locus lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;PMOFBV C.G. S.X.
0.01 3e+0 34 At3g63460 825521 WD-40 repeat family protein F:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex, membrane;MFOBPVA C.G. S.X.
0.01 3e+0 34 At3g10660 820235 CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2) predicted to encode calcium-dependent protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal, to A prevented the meristoylation . The G to A mutation decreased AtCPK2 membrane association by approximately 50%. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max GmaAffx.39861.1.S1_at BE347869 - - 4e-12 At1g19350 BES1 (BRI1-EMS-SUPPRESSOR 1) C.G. S.X.
0.01 7e+0 32 Hordeum vulgare Contig2250_at Contig2250 - - 2e+0 At3g59190 F-box family protein C.G. S.X.
0.27 2e-27 125 Oryza sativa Os02g0437800 AK067724.1 - Vacuolar protein-sorting protein 45 homolog(AtVPS45) 2e-27 At1g77140 VPS45 (VACUOLAR PROTEIN SORTING 45) C.G. S.X.
0.65 2e-131 470 Populus trichocarpa PtpAffx.205588.1.S1_at pmrna11037 hypothetical protein - 2e-131 At1g77140 VPS45 (VACUOLAR PROTEIN SORTING 45) C.G. S.X.
0.16 7e-14 79 Triticum aestivum Ta.27035.1.S1_at BT009595.1 - - 7e-14 At1g77140 VPS45 (VACUOLAR PROTEIN SORTING 45) C.G. S.X.
0.01 4e+0 32 Vitis vinifera 1618400_at CF371776 hypothetical protein LOC100267848 - 2e-1 At5g66680 DGL1 C.G. S.X.
0.33 8e-24 111 Zea mays Zm.14068.1.S1_at AI920492 vacuolar protein-sorting protein 45 - 2e-23 At1g77140 VPS45 (VACUOLAR PROTEIN SORTING 45) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
C GO:0009306 The controlled release of proteins from a cell or group of cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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