CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g76780

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.81 90.4 At1g76780 844012 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.82 90.9 At4g26020 828708 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.79 89.1 At2g32050 817765 cell cycle control protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.79 89.1 At3g49170 824078 EMB2261 (embryo defective 2261) F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFB S.X. H.G.
0.78 88.6 At5g14560 831307 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.78 88.6 At2g13900 815874 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO S.X. H.G.
0.75 86.9 At4g16050 827290 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA S.X. H.G.
0.73 85.5 At3g57900 824959 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.73 85.5 At4g14670 827117 CLPB2 This locus was originally annotated as encoding ClpB2 (also referred to as Hsp92.7), which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. However, according to Lee et al. (2007, Plant Journal, 49:115-127), there is no evidence for expression of an appropriate-sized mRNA from this locus. Re-annotation of the genome indicates that this locus potentially encodes a 68.8-kDa protein, containing only the N-terminal two thirds of the originally predicted open reading frame. This locus contains a 626-bp deletion in WS ecotype compared with the Col ecotype, which eliminates residues 1-86 of the predicted protein. S.X. H.G.
0.72 84.8 At2g30430 817594 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
531.6 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
415.4 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
368.7 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
322.8 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
310.6 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
306.0 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
295.4 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
284.8 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
244.5 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
240.8 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-2 44 At1g01490 839440 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;MOPBFVA C.G. S.X.
0.01 5e-2 42 At4g14290 827070 - F:unknown;P:unknown;C:plasma membrane;OBMFPVA C.G. S.X.
0.01 5e-2 42 At2g19800 816499 MIOX2 (MYO-INOSITOL OXYGENASE 2) Encodes a myo-inositol oxygenase family gene. C.G. S.X.
0.01 5e-2 42 At1g65580 842869 FRA3 (FRAGILE FIBER3) F:inositol or phosphatidylinositol phosphatase activity;P:unknown;C:unknown;MFPOB C.G. S.X.
0.01 2e-1 40 At3g44716 823600 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 2e-1 40 At2g34210 817982 structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor F:transcription elongation regulator activity, structural constituent of ribosome, transcription initiation factor activity;P:regulation of transcription from RNA polymerase II promoter, translation, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFAPBV C.G. S.X.
0.01 2e-1 40 At1g20550 838643 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 40 Glycine max GmaAffx.22541.1.S1_at BG156276 - - 3e+0 At5g66970 GTP binding C.G. S.X.
0.01 1e+0 36 Hordeum vulgare Contig3903_x_at Contig3903 hypothetical protein LOC732694 - 3e+0 At1g65150 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.01 2e-2 44 Oryza sativa Os03g0345700 9631.m02244 - Hypothetical protein 3e-3 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.01 4e-3 46 Populus trichocarpa PtpAffx.58146.1.S1_at CV261342 hypothetical protein - 6e-63 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.01 7e-1 38 Triticum aestivum Ta.23819.2.S1_x_at CK208180 - - 4e-6 At5g66750 CHR1 (CHROMATIN REMODELING 1) C.G. S.X.
0.01 1e-2 42 Vitis vinifera 1619140_at CF606031 hypothetical protein LOC100246049 - 4e-4 At2g35270 DNA-binding protein-related C.G. S.X.
0.01 3e-1 38 Zea mays ZmAffx.228.1.A1_at AI670240 - - 5e-2 At5g59000 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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