Gene omics information

Query gene ID At1g76500
Gene name SOB3 (SUPPRESSOR OF PHYB-4#3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2115.8At1g76500843983SOB3 (SUPPRESSOR OF PHYB-4#3)Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to lightS.X.H.G.
0.1811.4At4g38210829977ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.S.X.H.G.
0.1710.2At5g27410832800aminotransferase class IV family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFMS.X.H.G.
0.040.9At1g08590837381CLAVATA1 receptor kinase (CLV1)similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888)S.X.H.G.
0.030.6At2g45430819151DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;PMFBOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
157.499.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
88.099.9GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
79.499.9GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibition
73.399.9GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
63.299.8GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibition
63.099.8GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibition
54.699.8GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
46.799.8GSM133305RIKEN-NAKABAYASHI2AGSE5700AtGenExpress: Effect of ABA during seed imbibition
33.899.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.799.7GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seeds
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.522e-34147At1g20900838683ESC (ESCAROLA)Encodes an AT hook domain containing protein that acts redundantly with SOB3 to modulate hypocotyl growth inhibition in response to light.C.G.S.X.
0.048e-961At3g24080821994KRR1 family proteinF:molecular_function unknown;P:response to salt stress;C:cytosol;MOFBPVAC.G.S.X.
0.135e-756At3g04570819613DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;BPMOFVAC.G.S.X.
0.058e-652At5g41430834144zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.098e-652At4g35390829692AGF1 (AT-hook protein of GA feedback 1)F:transcription factor activity;P:negative regulation of gibberellic acid mediated signaling;C:nucleus;POBMFAVC.G.S.X.
0.082e-344At4g17800827502DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFC.G.S.X.
0.032e-344At1g76900844025AtTLP1 (TUBBY LIKE PROTEIN 1)Member of TLP familyC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.051e-242Glycine maxGma.2331.2.S1_a_atBG045781--4e-3At1g76500SOB3 (SUPPRESSOR OF PHYB-4#3)C.G.S.X.
0.056e-238Hordeum vulgareHVSMEm0012K15r2_atHVSMEm0012K15r2--7e-2At1g76500SOB3 (SUPPRESSOR OF PHYB-4#3)C.G.S.X.
0.036e-550Oryza sativaOs02g04480009630.m02338-Protein of unknown function DUF296 domaincontaining protein8e-6At4g22810DNA-binding protein-relatedC.G.S.X.
0.062e-138Populus trichocarpaPtpAffx.205903.1.S1_atpmrna11702hypothetical protein-4e-9At3g04570DNA-binding protein-relatedC.G.S.X.
0.041e-138Triticum aestivumTa.905.2.S1_atBQ804326avenin-like a precursor-like-7e+0At5g18400unknown proteinC.G.S.X.
0.049e-650Vitis vinifera1612469_atCF205528.1hypothetical protein LOC100248700-3e-5At4g34190SEP1 (STRESS ENHANCED PROTEIN 1)C.G.S.X.
0.022e-136Zea maysZm.7051.1.S1_atAI833408hypothetical protein LOC100277200-1e+0At5g61997unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009640The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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