CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g76310

Gene name CYCB2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.77 88.0 At1g76310 843964 CYCB2 core cell cycle genes S.X. H.G.
0.89 94.6 At3g02640 821289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.89 94.6 At5g36710 833636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.83 91.4 At3g25980 822195 mitotic spindle checkpoint protein, putative (MAD2) F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOP S.X. H.G.
0.67 81.6 At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. S.X. H.G.
0.67 81.6 At1g76540 843987 CDKB2 Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle. Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. Required for proper organization of the shoot apical meristem and for hormone signaling. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.7 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.1 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.1 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
26.3 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.2 99.7 E-MEXP-1360-raw-cel-1561600622
22.7 99.6 GSM133950 Murray_2-6_T10-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
22.5 99.6 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.3 99.6 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.8 99.6 E-MEXP-682-raw-cel-922397713
21.6 99.6 GSM131654 ATGE_8_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.57 2e-161 569 At1g20610 838650 CYCB2 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVB C.G. S.X.
0.51 4e-113 408 At1g20590 838648 cyclin, putative F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:endomembrane system, nucleus;MPOF C.G. S.X.
0.04 1e-2 42 At4g35620 829714 CYCB2 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVB C.G. S.X.
0.01 2e-1 38 At3g17310 820994 methyltransferase family protein F:methyltransferase activity, DNA binding;P:DNA methylation;C:cellular_component unknown;PO C.G. S.X.
0.01 2e-1 38 At2g17620 816269 CYCB2 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV C.G. S.X.
0.01 6e-1 36 At5g55740 835668 CRR21 (chlororespiratory reduction 21) Encodes a member of the E+ subgroup of the PPR protein family, containing the E and E+ motifs following a tandem array of PPR motifs. It also contains an unknown motif consisting of 15 aa, which is highly conserved in some PPR proteins, including CRR4. CRR21 is involved in RNA editing of the site 2 of ndhD (ndhD-2),which encodes a subunit of the NDH complex. The RNA editing changes aa 128 from Ser to Leu. Mutants have impaired NDH complex activity. C.G. S.X.
0.01 6e-1 36 At5g13520 831196 peptidase M1 family protein F:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAP C.G. S.X.
0.02 6e-1 36 At4g07965 826302 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-10 67 Glycine max Gma.14616.1.S1_at CD412608 - - 1e-10 At1g76310 CYCB2 C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig24446_at Contig24446 - - 2e+1 At5g22440 60S ribosomal protein L10A (RPL10aC) C.G. S.X.
0.07 1e-6 56 Oryza sativa Os06g0726800 AK070518.1 - G2/mitotic-specific cyclin 2 (B-like cyclin)(CycOs2) 4e-6 At1g20590 cyclin, putative C.G. S.X.
0.20 1e-12 75 Populus trichocarpa PtpAffx.147539.1.A1_at CV234344 - - 6e-13 At1g76310 CYCB2 C.G. S.X.
0.02 7e-1 36 Triticum aestivum Ta.22585.2.S1_x_at BQ482750 - - 3e+0 At5g46820 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1610308_at CF414056 - - 4e+0 At4g17905 ATL4H C.G. S.X.
0.07 8e-8 57 Zea mays Zm.4846.1.A1_at BQ538226 cyclin B2 - 3e-7 At1g76310 CYCB2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0051726 Any process that modulates the rate or extent of progression through the cell cycle.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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