CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g75940

Gene name ATA27

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g75940 843927 ATA27 encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen. S.X. H.G.
0.98 97.8 At2g03740 814901 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBMOFA S.X. H.G.
0.98 97.8 At1g20120 838601 family II extracellular lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMAV S.X. H.G.
0.98 97.8 At1g68875 843220 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.96 97.3 At2g03850 814911 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBOMFA S.X. H.G.
0.96 97.3 At1g75910 843924 EXL4 member of Lipase proteins S.X. H.G.
0.90 95.1 At3g25050 822096 XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3) encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment. S.X. H.G.
0.89 94.6 At1g06260 837137 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF S.X. H.G.
0.89 94.6 At3g51590 824322 LTP12 (LIPID TRANSFER PROTEIN 12) Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. S.X. H.G.
0.89 94.6 At4g14815 827138 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
144.1 99.9 E-MEXP-1592-raw-cel-1617526880
137.9 99.9 E-MEXP-1592-raw-cel-1617526944
123.8 99.9 E-MEXP-1592-raw-cel-1617526976
120.6 99.9 GSM232889 Wt.3-1.0 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
119.2 99.9 E-MEXP-1592-raw-cel-1617526848
111.2 99.9 GSM253201 Nontransgenic(ga1-3rgargl2)-DEX-REP3 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
110.2 99.9 GSM253199 Nontransgenic(ga1-3rgargl2)-DEX-REP1 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
108.0 99.9 E-MEXP-1592-raw-cel-1617526912
90.1 99.9 GSM232882 Mut.3-2.90 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
88.4 99.9 GSM131580 ATGE_32_B2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.42 9e-121 434 At3g21370 821691 BGLU19 (BETA GLUCOSIDASE 19) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA C.G. S.X.
0.44 4e-92 339 At1g52400 841670 BGLU18 (BETA GLUCOSIDASE 18) encodes a member of glycosyl hydrolase family 1, located in inducible ER bodies which were formed after wounding, required in inducible ER body formation C.G. S.X.
0.22 2e-41 171 At3g09260 820082 PYK10 Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica. C.G. S.X.
0.21 4e-18 93 At1g66280 842945 BGLU22 F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:membrane;BOPMFA C.G. S.X.
0.22 6e-14 79 At1g66270 842944 BGLU21 F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFA C.G. S.X.
0.19 9e-10 65 At5g28510 832944 BGLU24 (BETA GLUCOSIDASE 24) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA C.G. S.X.
0.02 3e-9 63 At2g44490 819056 PEN2 (PENETRATION 2) Encodes a glycosyl hydrolase that localizes to peroxisomes and acts as a component of an inducible preinvasion resistance mechanism. Required for mlo resistance. C.G. S.X.
0.07 5e-8 59 At3g60120 825182 BGLU27 (BETA GLUCOSIDASE 27) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-3 46 Glycine max GmaAffx.55223.1.S1_at BM086162 - - 9e-4 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.02 6e-3 42 Hordeum vulgare Contig8927_at Contig8927 - - 2e-8 At5g36890 BGLU42 (BETA GLUCOSIDASE 42) C.G. S.X.
0.02 4e-1 38 Oryza sativa Os01g0508000 NM_193731.1 - Beta-glucosidase 5e-11 At3g18070 BGLU43 (BETA GLUCOSIDASE 43) C.G. S.X.
0.07 2e-2 42 Populus trichocarpa PtpAffx.204078.1.S1_s_at pmrna8052 hypothetical protein - 4e-5 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.03 5e-2 40 Triticum aestivum TaAffx.4445.1.S1_at CA741494 - - 1e-3 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.03 4e-3 42 Vitis vinifera 1622281_at CD715637 hypothetical LOC100250160 - 2e-11 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) C.G. S.X.
0.02 5e+0 32 Zea mays ZmAffx.1117.1.A1_at AW257962 - - 2e+0 At3g15150 zinc ion binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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