CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g75800

Gene name pathogenesis-related thaumatin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g75800 843913 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVA S.X. H.G.
0.46 59.8 At1g01820 839257 PEX11C (PEROXIN 11C) member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. S.X. H.G.
0.44 57.2 At2g01570 814686 RGA1 (REPRESSOR OF GA1-3 1) Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development. S.X. H.G.
0.43 55.3 At4g00335 828093 RHB1A F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;PMOFV S.X. H.G.
0.41 52.4 At4g05150 825863 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB S.X. H.G.
0.39 48.4 At2g37480 818325 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB S.X. H.G.
0.39 48.4 At5g08520 830751 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFB S.X. H.G.
0.39 48.4 At5g56140 835713 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPBOFVA S.X. H.G.
0.38 46.7 At2g45980 819206 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.38 46.7 At3g14100 820626 oligouridylate-binding protein, putative F:mRNA 3'-UTR binding;P:unknown;C:unknown;MPFOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.2 99.7 GSM142632 MC002_ATH1_A4.1-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
29.2 99.7 GSM142653 MC002_ATH1_A11.1-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
24.8 99.6 GSM142628 MC002_ATH1_A2.3-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
23.3 99.6 GSM142645 MC002_ATH1_A8.2-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
20.1 99.6 GSM142655 MC002_ATH1_A11.3-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.8 99.5 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.5 99.5 GSM142627 MC002_ATH1_A2.2-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.7 99.5 GSM142654 MC002_ATH1_A11.2-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
15.6 99.5 GSM242962 Mock day 7 (day7E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
15.5 99.5 GSM133309 RIKEN-NAKABAYASHI4B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 6e-22 105 At4g36010 829757 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOV C.G. S.X.
0.53 6e-19 95 At1g20030 838592 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOV C.G. S.X.
0.08 6e-13 75 At4g38660 830022 thaumatin, putative F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV C.G. S.X.
0.08 1e-10 67 At4g38670 830023 pathogenesis-related thaumatin family protein F:unknown;P:response to other organism;C:unknown;PMFBOV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-5 52 Glycine max GmaAffx.54236.1.S1_at BE475543 - - 2e-11 At1g20030 pathogenesis-related thaumatin family protein C.G. S.X.
0.03 4e-3 42 Hordeum vulgare Contig10686_s_at Contig10686 - - 4e-8 At4g24180 - C.G. S.X.
0.07 4e-3 44 Oryza sativa OsAffx.16007.1.S1_at - - - 0 C.G. S.X.
0.20 3e-12 73 Populus trichocarpa PtpAffx.32035.1.S1_at BI138981 hypothetical protein - 1e-12 At1g75800 pathogenesis-related thaumatin family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.13256.2.S1_at CK193207 - - 1e-5 At4g24180 - C.G. S.X.
0.05 4e-2 38 Vitis vinifera 1616617_at AF195654.1 SCUTL2 - 3e-5 At1g75040 PR5 (PATHOGENESIS-RELATED GENE 5) C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.418.1.A1_at AI676850 - - 1e-2 Atmg00760 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0051707 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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