CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g75350

Gene name emb2184 (embryo defective 2184)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.68 82.2 At1g75350 843871 emb2184 (embryo defective 2184) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:ribosome, chloroplast, chloroplast stroma, chloroplast envelope;BOP S.X. H.G.
0.90 95.1 At1g79850 844324 RPS17 (RIBOSOMAL PROTEIN S17) nuclear-encoded 30S chloroplast ribosomal protein S17 S.X. H.G.
0.90 95.1 At1g78630 844199 emb1473 (embryo defective 1473) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAP S.X. H.G.
0.89 94.6 At2g33450 817910 50S ribosomal protein L28, chloroplast (CL28) F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast, membrane;BOPF S.X. H.G.
0.88 94.0 At2g24090 816943 ribosomal protein L35 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOPMF S.X. H.G.
0.87 93.5 At1g64510 842759 ribosomal protein S6 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast;BOP S.X. H.G.
0.87 93.5 At4g01310 827947 ribosomal protein L5 family protein F:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFM S.X. H.G.
0.86 93.1 At1g07320 837243 RPL4 encodes a plastid ribosomal protein L4 S.X. H.G.
0.86 93.1 At3g52150 824379 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;MPOFBA S.X. H.G.
0.85 92.4 At3g54210 824588 ribosomal protein L17 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOMFP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 98.3 E-MEXP-503-raw-cel-821666228
4.6 97.9 GSM265535 ex1_flu_dark 8hours/30 minute light_2 GSE10509 EXECUTER1- and EXECUTER2-dependent transfer of stress signals from the plastid to the nucleus of Arabidopsis thaliana
4.5 97.8 E-MEXP-503-raw-cel-821666147
4.4 97.8 GSM265532 flu_dark 8hours/30 minute light_1 GSE10509 EXECUTER1- and EXECUTER2-dependent transfer of stress signals from the plastid to the nucleus of Arabidopsis thaliana
4.2 97.6 E-MEXP-883-raw-cel-1697709970
4.1 97.6 GSM265538 ex1ex2flu_dark 8hours/30 minute light_1 GSE10509 EXECUTER1- and EXECUTER2-dependent transfer of stress signals from the plastid to the nucleus of Arabidopsis thaliana
4.0 97.5 GSM157392 Sakakibara_1-11_DMSO-treatment-mutant_Rep2_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
4.0 97.5 GSM157393 Sakakibara_1-12_DMSO-treatment-mutant_Rep3_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
4.0 97.5 E-MEXP-503-raw-cel-821666186
4.0 97.5 GSM265537 ex2_flu_dark 8hours/30 minute light_2 GSE10509 EXECUTER1- and EXECUTER2-dependent transfer of stress signals from the plastid to the nucleus of Arabidopsis thaliana
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 5e-2 38 At1g28230 839717 PUP1 (PURINE PERMEASE 1) Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation. C.G. S.X.
0.01 2e-1 36 At5g58160 835928 actin binding F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MBFOPVA C.G. S.X.
0.01 2e-1 36 At3g10010 820162 DML2 (DEMETER-LIKE 2) Encodes a protein with DNA glycosylase activity that is involved in maintaining methylation marks. C.G. S.X.
0.02 8e-1 34 At5g38250 833807 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 8e-1 34 At5g38240 833806 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 8e-1 34 At5g20930 832217 TSL (TOUSLED) Nuclear serine/threonine protein kinase that requires a coiled-coil region for oligomerization and catalytic activity. Required for leaf and flower development. Expression localized to the developing style by stage 13. C.G. S.X.
0.02 8e-1 34 At5g45890 834629 SAG12 (SENESCENCE-ASSOCIATED GENE 12) Senescence-associated gene 12 (SAG12) encoding a cysteine protease influenced by cytokinin, auxin, and sugars.Localized to special vacuole found during senescence called senescence associated vacuoles which are different from central vacuole in the tonoplast composition and pH. C.G. S.X.
0.04 8e-1 34 At5g28800 832996 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 8e-1 34 At5g45980 834638 WOX8 (WUSCHEL RELATED HOMEOBOX 8) Arabidopsis thaliana WOX8 protein. Contains similarity to homeodomain transcription factor. Positively regulates early embryonic growth. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Glycine max HgAffx.16940.2.A1_at CK349938 - - 5e+0 At5g35090 unknown protein C.G. S.X.
0.03 4e-1 34 Hordeum vulgare Contig4565_s_at Contig4565 - - 5e-7 At3g47300 SELT (SELT-LIKE PROTEIN PRECURSOR) C.G. S.X.
0.05 7e+0 32 Oryza sativa Os09g0348900 9637.m01537 - - 1e-2 At1g22300 GRF10 (GENERAL REGULATORY FACTOR 10) C.G. S.X.
0.32 6e-27 121 Populus trichocarpa PtpAffx.49635.1.S1_at CX182101 - - 7e-27 At1g75350 emb2184 (embryo defective 2184) C.G. S.X.
0.04 3e+0 32 Triticum aestivum Ta.22348.1.S1_at CA741184 - - 3e+0 At1g75350 emb2184 (embryo defective 2184) C.G. S.X.
0.16 4e-12 69 Vitis vinifera 1619816_at CA817914 hypothetical protein LOC100250681 - 2e-11 At1g75350 emb2184 (embryo defective 2184) C.G. S.X.
0.04 4e-1 34 Zea mays ZmAffx.1501.1.S1_at 40794996-118 - - 8e-1 At5g12300 C2 domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006412 The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
C GO:0042254 The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.
N GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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