CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g75290

Gene name oxidoreductase, acting on NADH or NADPH

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g75290 843866 oxidoreductase, acting on NADH or NADPH encodes a protein whose sequence is similar to an isoflavone reductase S.X. H.G.
0.87 93.5 At2g39830 818570 DAR2 (DA1-RELATED PROTEIN 2) F:zinc ion binding;P:unknown;C:chloroplast;MOPFB S.X. H.G.
0.83 91.4 At2g34540 818017 unknown protein F:unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.82 90.9 At5g67550 836891 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.82 90.9 At4g16640 827365 matrix metalloproteinase, putative F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFA S.X. H.G.
0.82 90.9 At1g06490 837160 ATGSL07 (glucan synthase-like 7) encodes a gene similar to callose synthase S.X. H.G.
0.82 90.9 At1g61830 3767602 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.82 90.9 At3g18670 821398 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOPBFAV S.X. H.G.
0.82 90.9 At5g38070 833787 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV S.X. H.G.
0.81 90.4 At1g11915 837741 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
541.5 100.0 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
426.8 100.0 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
230.1 100.0 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
211.7 100.0 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
198.3 100.0 E-MEXP-1474-raw-cel-1593932481
175.0 100.0 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
88.6 99.9 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
87.0 99.9 E-MEXP-1474-raw-cel-1593932673
77.3 99.9 GSM128733 Hennig_1-5_flowers-CK_021114_2_B_Rep2_ATH1 GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
75.4 99.9 E-MEXP-285-raw-cel-440783335
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.87 8e-151 533 At1g75280 843865 isoflavone reductase, putative isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress. C.G. S.X.
0.76 1e-87 323 At1g75300 843867 isoflavone reductase, putative encodes a protein whose sequence is similar to an isoflavone reductase C.G. S.X.
0.19 8e-9 61 At4g39230 830078 isoflavone reductase, putative encodes a protein whose sequence is similar to phenylcoumaran benzylic ether reductase (PCBER), which catalyzes NADPH-dependent reduction of 8-5' linked lignans such as dehydrodiconiferyl alcohol to give isodihydrodehydrodiconiferyl alcohol. C.G. S.X.
0.20 5e-7 56 At1g19540 838541 isoflavone reductase, putative F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA C.G. S.X.
0.06 8e-3 42 At4g34540 829605 isoflavone reductase family protein encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine. C.G. S.X.
0.02 1e-1 38 At1g10600 837603 - F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:chloroplast;MFPO C.G. S.X.
0.04 5e-1 36 At4g13660 827000 PRR2 (PINORESINOL REDUCTASE 2) Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows preference for pinoresinol and not lariciresinol. C.G. S.X.
0.01 5e-1 36 At4g39530 830107 pentatricopeptide (PPR) repeat-containing protein F:binding;P:biological_process unknown;C:unknown;POMFBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 7e-7 56 Glycine max Gma.5863.1.S1_at AJ003245.1 NADPH:isoflavone reductase - 8e-7 At1g75290 oxidoreductase, acting on NADH or NADPH C.G. S.X.
0.05 2e-4 46 Hordeum vulgare Contig8652_at Contig8652 isoflavone reductase - 2e+0 At4g39230 isoflavone reductase, putative C.G. S.X.
0.07 1e-2 42 Oryza sativa Os06g0472200 AK103043.1 - Isoflavone reductase homolog Bet v 6.0101(Fragment) 3e-3 At4g39230 isoflavone reductase, putative C.G. S.X.
0.22 2e-10 67 Populus trichocarpa PtpAffx.207304.1.S1_at pmrna14485 - - 1e-10 At1g75290 oxidoreductase, acting on NADH or NADPH C.G. S.X.
0.05 5e-4 46 Triticum aestivum Ta.1562.1.S1_at CK151817 - - 5e-2 At1g19540 isoflavone reductase, putative C.G. S.X.
0.07 2e-4 46 Vitis vinifera 1609045_at CF214620 isoflavone reductase-like protein 4 - 2e-7 At1g75280 isoflavone reductase, putative C.G. S.X.
0.04 5e-5 48 Zea mays Zm.391.1.S1_at U33318.1 isoflavone reductase-like1 - 2e-4 At1g75290 oxidoreductase, acting on NADH or NADPH C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006808 Any process that modulates the frequency, rate or extent of nitrogen utilization.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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