CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g75280

Gene name isoflavone reductase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g75280 843865 isoflavone reductase, putative isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress. S.X. H.G.
0.22 17.5 At1g65960 842908 GAD2 (GLUTAMATE DECARBOXYLASE 2) glutamate decarboxylase (GAD2) S.X. H.G.
0.20 14.4 At3g19000 821433 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:biological_process unknown;C:cellular_component unknown;POBFM S.X. H.G.
0.14 6.8 At1g05850 837095 POM1 (POM-POM1) Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants. S.X. H.G.
0.13 5.8 At1g70730 843410 phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative F:intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity;P:response to cadmium ion, carbohydrate metabolic process;C:cytosol, nucleus, plasma membrane;BOMFPA S.X. H.G.
0.12 4.9 At3g02720 820875 DJ-1 family protein / protease-related F:hydrolase activity, acting on glycosyl bonds;P:biological_process unknown;C:cellular_component unknown;BOAPMF S.X. H.G.
0.11 4.1 At4g27430 828851 CIP7 (COP1-INTERACTING PROTEIN 7) Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression. S.X. H.G.
0.11 4.1 At3g08510 819999 ATPLC2 (PHOSPHOLIPASE C 2) Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. S.X. H.G.
0.11 4.1 At5g05170 830399 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. S.X. H.G.
0.10 3.4 At5g49970 835061 ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE) encodes the bifunctional pyridoxine (pyridoxamine) 5�-phosphate oxidase (PPOX)(EC 1.4.3.5) that is involved in the formation of pyridoxal 5'-phosphate (member of the vitamin B6 group) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
47.5 99.8 E-MEXP-265-raw-cel-414617695
42.0 99.8 E-MEXP-265-raw-cel-414618491
41.2 99.8 E-MEXP-265-raw-cel-414618796
40.3 99.8 E-MEXP-265-raw-cel-414617890
39.3 99.8 E-MEXP-265-raw-cel-414618291
39.3 99.8 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
39.3 99.8 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
39.0 99.8 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
34.9 99.7 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
34.6 99.7 GSM131657 ATGE_27_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.87 8e-151 533 At1g75290 843866 oxidoreductase, acting on NADH or NADPH encodes a protein whose sequence is similar to an isoflavone reductase C.G. S.X.
0.86 4e-134 478 At1g75300 843867 isoflavone reductase, putative encodes a protein whose sequence is similar to an isoflavone reductase C.G. S.X.
0.34 3e-24 113 At1g19540 838541 isoflavone reductase, putative F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA C.G. S.X.
0.30 1e-13 77 At4g39230 830078 isoflavone reductase, putative encodes a protein whose sequence is similar to phenylcoumaran benzylic ether reductase (PCBER), which catalyzes NADPH-dependent reduction of 8-5' linked lignans such as dehydrodiconiferyl alcohol to give isodihydrodehydrodiconiferyl alcohol. C.G. S.X.
0.03 5e-4 46 At4g34540 829605 isoflavone reductase family protein encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine. C.G. S.X.
0.03 1e-1 38 At4g13660 827000 PRR2 (PINORESINOL REDUCTASE 2) Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows preference for pinoresinol and not lariciresinol. C.G. S.X.
0.01 1e-1 38 At3g51070 824271 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:unknown;MOBFPVA C.G. S.X.
0.01 1e-1 38 At2g19110 816428 HMA4 Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and Cd resistance, suggesting a role in Zn and Cd transport. C.G. S.X.
0.02 5e-1 36 At2g24080 816942 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 8e-16 85 Glycine max GmaAffx.93511.1.S1_s_at CF809236 isoflavone reductase homolog 2 - 1e-12 At4g39230 isoflavone reductase, putative C.G. S.X.
0.05 4e-3 42 Hordeum vulgare Contig8652_at Contig8652 isoflavone reductase - 2e+0 At4g39230 isoflavone reductase, putative C.G. S.X.
0.04 6e-2 40 Oryza sativa Os12g0265100 AK065317.1 - Pinoresinol-lariciresinol reductase TH2 2e-16 At1g32100 PRR1 (PINORESINOL REDUCTASE 1) C.G. S.X.
0.24 1e-14 81 Populus trichocarpa PtpAffx.97585.1.S1_at CA823453 phenylcoumaran benzylic ether reductase 7 - 1e-14 At1g75280 isoflavone reductase, putative C.G. S.X.
0.05 1e-1 38 Triticum aestivum Ta.1562.1.S1_at CK151817 - - 5e-2 At1g19540 isoflavone reductase, putative C.G. S.X.
0.18 4e-8 57 Vitis vinifera 1609045_at CF214620 isoflavone reductase-like protein 4 - 2e-7 At1g75280 isoflavone reductase, putative C.G. S.X.
0.02 8e-1 34 Zea mays Zm.14687.1.S1_s_at CA828256 hypothetical protein LOC100272479 - 3e-1 At2g15770 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00640 Propanoate metabolism
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