CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g75160

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.59 74.7 At1g75160 843853 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.55 70.6 At5g42340 834240 binding / ubiquitin-protein ligase F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;MPOFBV S.X. H.G.
0.53 68.6 At1g13890 837948 SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) Encodes a member of a gene family homologous to mammalian SNAP25, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33. S.X. H.G.
0.53 68.6 At3g20200 821564 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.47 61.2 At3g61230 825295 LIM domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.42 53.9 At3g42880 823335 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.33 38.1 At5g41780 834183 myosin heavy chain-related F:unknown;P:biological_process unknown;C:unknown;MOBFPAV S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
182.4 100.0 E-MEXP-1138-raw-cel-1432773322
163.4 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
162.5 99.9 E-MEXP-1138-raw-cel-1432773258
155.1 99.9 E-MEXP-1138-raw-cel-1432773290
153.8 99.9 GSM239254 CaMV::DME stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
144.7 99.9 E-MEXP-1138-raw-cel-1432773354
142.8 99.9 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
129.9 99.9 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
118.7 99.9 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
109.4 99.9 E-MEXP-1138-raw-cel-1432773162
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 4e-8 59 At3g55720 824738 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.08 2e-7 57 At5g66740 836807 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e-2 42 At1g49840 841407 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.01 4e-2 40 At5g35200 833474 epsin N-terminal homology (ENTH) domain-containing protein F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:plasma membrane;MPFOB C.G. S.X.
0.01 4e-2 40 At5g52630 835340 MEF1 (MITOCHONDRIAL RNA EDITING FACTOR 1) Encodes a member of the DYW subfamily of pentatricopeptide repeat (PPR) proteins. Loss of MEF1 function affects RNA editing at specific sites in the mitochondrial genome but do not exhibit obvious phenotypes. C.G. S.X.
0.01 1e-1 38 At5g58960 836013 GIL1 (GRAVITROPIC IN THE LIGHT) Mutant plants display impaired light-regulation of the hypocotyl randomization response. C.G. S.X.
0.01 6e-1 36 At3g21230 821677 4CL5 (4-coumarate:CoA ligase 5) The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo. C.G. S.X.
0.01 6e-1 36 At3g25670 822155 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA C.G. S.X.
0.02 6e-1 36 At2g23180 816850 CYP96A1 member of CYP96A C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-3 44 Glycine max GmaAffx.10734.1.S1_at BU926083 - - 6e-2 At1g49032 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HVSMEm0022L18r2_at HVSMEm0022L18r2 - - 3e+0 At4g35900 FD C.G. S.X.
0.02 1e+0 36 Oryza sativa Os01g0310000 9629.m01985 - - 8e+0 At5g16160 unknown protein C.G. S.X.
0.10 9e-4 46 Populus trichocarpa PtpAffx.211993.1.S1_at pmrna23552 hypothetical protein - 6e-4 At1g75160 unknown protein C.G. S.X.
0.02 2e+0 34 Triticum aestivum Ta.15444.1.S1_at CA484784 - - 2e+0 At3g09380 - C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1620610_at CF373713 hypothetical protein LOC100250873 /// hypothetical protein LOC100254032 - 2e+0 At4g21600 ENDO5 (endonuclease 5) C.G. S.X.
0.03 1e+0 34 Zea mays ZmAffx.671.1.A1_at AI734431 - - 3e+0 At3g50810 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage