Gene omics information

Query gene ID At1g75010
Gene name ARC3 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8391.4At1g75010843839ARC3 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3)Encodes ARC3 (Accumulation and Replication of Chloroplast 3), a chloroplast division factor functioning in the initiation of chloroplast division. ARC3 is a chimera of the prokaryotic FtsZ and part of the eukaryotic phosphatidylinositol-4-phosphate 5-kinase (PIP5K). Located on the outer surface of the chloroplast in a ring-like structure at the early stage of chloroplast division. The arc3 mutant has a small number of abnormally large chloroplasts in the cell.S.X.H.G.
0.4659.8At1g752108438585' nucleotidase family proteinF:5'-nucleotidase activity;P:biological_process unknown;C:chloroplast;MPBOS.X.H.G.
0.4659.8At5g03420831846-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPAVS.X.H.G.
0.4457.2At1g06820837193CRTISO (CAROTENOID ISOMERASE)Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene.S.X.H.G.
0.4253.9At5g04710830349aspartyl aminopeptidase, putativeF:aminopeptidase activity, zinc ion binding;P:proteolysis;C:chloroplast, vacuole;BOFMPAS.X.H.G.
0.4050.8At1g65410842852ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11)member of NAP subfamilyS.X.H.G.
0.3643.6At1g19800838568TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1)Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate.S.X.H.G.
0.3338.1At3g20320821576TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process.S.X.H.G.
0.3338.1At3g60620825233phosphatidate cytidylyltransferase family proteinF:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:chloroplast, membrane, chloroplast envelope;BOMFPS.X.H.G.
0.3235.7At1g31500840040endonuclease/exonuclease/phosphatase family proteinF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MFOPBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
80.999.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
56.999.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
40.799.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.299.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.399.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.899.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.199.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
22.299.6GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.999.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.899.6GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.013e-138At5g61250836246AtGUS1 (Arabidopsis thaliana glucuronidase 1)Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-β-GlcNAc attachment sites and serine-, threonine- and tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted (WoLF PSORT program) to be secreted.C.G.S.X.
0.013e-138At5g43670834387transport protein, putativeF:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOPC.G.S.X.
0.013e-138At4g09120826490zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.013e-138At2g07750815422DEAD box RNA helicase, putativeF:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:chloroplast;BOMFPAVC.G.S.X.
0.013e-138At1g63250842631DEAD box RNA helicase, putativeF:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAVC.G.S.X.
0.011e+036At5g45250834561RPS4 (RESISTANT TO P. SYRINGAE 4)RPS4 belongs to the Toll/interleukin-1 receptor (TIR)-nucleotide binding site (NBS)-Leu-rich repeat (LRR) class of disease resistance (R ) genes. Confers specific resistance to Pseudomonas syringae pv. tomato carrying the avirulence gene AvrRPS4. Produces alternative transcripts with truncated open reading frames.C.G.S.X.
0.011e+036At5g53790835460unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.014e-138Glycine maxHgAffx.17982.1.S1_atCB238712--2e-1At4g21610LOL2 (LSD ONE LIKE 2)C.G.S.X.
0.014e-240Hordeum vulgareContig25290_atContig25290--1e-1At1g75550glycine-rich proteinC.G.S.X.
0.021e-140Oryza sativaOs09g0555600AK101142.1-MORN motif repeat containing protein9e-2At1g75010ARC3 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3)C.G.S.X.
0.091e-759Populus trichocarpaPtpAffx.208832.1.S1_x_atpmrna17511hypothetical protein-9e-9At1g75010ARC3 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3)C.G.S.X.
0.015e+034Triticum aestivumTaAffx.83391.1.S1_atCA658082--2e-1At5g23750remorin family proteinC.G.S.X.
0.021e+034Vitis vinifera1618798_s_atCF213901hypothetical protein LOC100243733-2e-20At3g10670ATNAP7C.G.S.X.
0.018e+032Zea maysZmAffx.879.1.A1_atAI770799--2e-1At3g57720protein kinase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010020The division of a chloroplast within a cell to form two or more separate chloroplast compartments. This division occurs independently of mitosis.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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