Gene omics information

Query gene ID At1g74990
Gene name zinc finger (C3HC4-type RING finger) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5974.7At1g74990843837zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVS.X.H.G.
0.8994.6At3g58290824998meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFS.X.H.G.
0.8994.6At5g53510835433ATOPT9 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9)oligopeptide transporterS.X.H.G.
0.8994.6At1g61630842459equilibrative nucleoside transporter, putative (ENT7)F:nucleoside transmembrane transporter activity;P:transport;C:plasma membrane;MOPFBS.X.H.G.
0.8894.0At1g07340837245ATSTP2 (SUGAR TRANSPORTER 2)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, monosaccharide transmembrane transporter activity;P:pollen development, monosaccharide transport;C:integral to plasma membrane, membrane;FBMPOAS.X.H.G.
0.8894.0At1g48940841316plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PS.X.H.G.
0.8894.0At5g08030830697glycerophosphoryl diester phosphodiesterase family proteinF:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:endomembrane system;BOPMFAVS.X.H.G.
0.8894.0At5g59040836021COPT3encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeastS.X.H.G.
0.8894.0At5g59810836102SBT5.4F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOFAMS.X.H.G.
0.8693.1At1g36150840520protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;MOFPBVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
486.2100.0GSM142737DH001_ATH1_A4-UNM2GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
420.2100.0GSM142734DH001_ATH1_A1-UNM1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
354.7100.0GSM142738DH001_ATH1_A5-BCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
351.9100.0GSM142735DH001_ATH1_A2-BCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
141.999.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
130.699.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
120.299.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
114.499.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
112.299.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
107.399.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.149e-1373At1g19310838513zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVBC.G.S.X.
0.063e-342At4g03510825654RMA1RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway.C.G.S.X.
0.033e-342At2g44410819048protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVC.G.S.X.
0.011e-240At3g06290819803-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBC.G.S.X.
0.038e-134At5g03170831914FLA11F:unknown;P:unknown;C:anchored to membrane;PBOMAFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e-136Glycine maxGmaAffx.70854.1.A1_atBE660972--2e-2At1g49310unknown proteinC.G.S.X.
0.046e+030Hordeum vulgareHA02d18r_atHA02d18r--1e+0At5g13250unknown proteinC.G.S.X.
0.042e+034Oryza sativaOs03g0678400AK068558.1-Zn-finger, RING domain containing protein1e-3At4g27470zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.105e-342Populus trichocarpaPtpAffx.8418.1.A1_atCV242567hypothetical protein-7e-3At1g74990zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.058e-134Triticum aestivumTa.11475.3.S1_x_atCA695712--7e-5At4g27470zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.042e-134Vitis vinifera1611741_atCF415665--4e+0At4g30064LCR61 (Low-molecular-weight cysteine-rich 61)C.G.S.X.
0.041e+032Zea maysZmAffx.1082.1.A1_atAI973391--3e+0At1g60983SCRL8 (SCR-Like 8)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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