CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g74770

Gene name protein binding / zinc ion binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At1g74770 843816 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB S.X. H.G.
0.50 65.3 At3g61410 825313 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.46 59.8 At4g31940 829324 CYP82C4 member of CYP82C S.X. H.G.
0.43 55.3 At4g10510 826643 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOAFM S.X. H.G.
0.38 46.7 At1g14185 837978 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA S.X. H.G.
0.35 41.6 At1g74760 - - - S.X. H.G.
0.29 30.3 At4g09110 826489 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
254.9 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
179.2 100.0 GSM265474 Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
172.1 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
161.0 99.9 GSM265473 Arabidopsis, whole roots, -Fe, 72 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
150.6 99.9 GSM265471 Arabidopsis, whole roots, -Fe, 48 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
149.0 99.9 GSM265472 Arabidopsis, whole roots, -Fe, 48 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
140.8 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
135.7 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
115.5 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
108.3 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.54 5e-180 632 At1g18910 838472 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBV C.G. S.X.
0.01 3e-2 42 At3g53840 824551 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 3e-2 42 At1g34540 840356 CYP94D1 member of CYP94D C.G. S.X.
0.01 5e-1 38 At5g63410 836460 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 5e-1 38 At4g15060 827169 F-box protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBF C.G. S.X.
0.01 5e-1 38 At3g63460 825521 WD-40 repeat family protein F:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex, membrane;MFOBPVA C.G. S.X.
0.01 5e-1 38 At2g01720 814701 ribophorin I family protein F:oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity;P:protein amino acid glycosylation;C:endoplasmic reticulum, plasma membrane, plant-type cell wall;MFOP C.G. S.X.
0.01 5e-1 38 At2g02040 814735 PTR2 (PEPTIDE TRANSPORTER 2) Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 1e-20 103 Glycine max GmaAffx.74115.1.S1_at BQ452690 - - 2e-21 At1g74770 protein binding / zinc ion binding C.G. S.X.
0.03 1e-3 46 Hordeum vulgare Contig16361_at Contig16361 - - 1e-38 At3g18290 EMB2454 (embryo defective 2454) C.G. S.X.
0.02 2e-1 40 Oryza sativa Os05g0551000 AK068028.1 - Protein of unknown function HHE domain containingprotein 4e-16 At3g18290 EMB2454 (embryo defective 2454) C.G. S.X.
0.13 8e-13 77 Populus trichocarpa Ptp.355.1.A1_at CK088544 hypothetical protein - 1e-13 At1g74770 protein binding / zinc ion binding C.G. S.X.
0.01 1e-1 40 Triticum aestivum Ta.2460.1.S1_x_at BG905457 - - 1e-2 At5g25560 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1614744_at CB977458 hypothetical protein LOC100259020 - 3e-13 At3g07210 unknown protein C.G. S.X.
0.01 3e+0 34 Zea mays Zm.1594.1.S1_at AF532781.1 hypothetical LOC541975 - 4e-27 At3g18290 EMB2454 (embryo defective 2454) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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